BAC Information

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BAC

Clone NameMSMg01-381H10
Chromosome11 (Build37)
Map Location 105,044,196 - 105,044,655
singlet/doubletsinglet
Overlap geneTlk2
Upstream gene4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, 1700052K11Rik
Downstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381H10.T7 (MSMg01no381_h10.b1)MSMg01-381H10.TJ (MSMg01no381_h10.g1)
ACCAG485598AG485599
length754735
length of high quality
(start - end)		464 (37 - 500)428 (76 - 503)
definitionCHROMAT_FILE: MSMg01no381_h10.b1 PHD_FILE: MSMg01no381_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:53 2005CHROMAT_FILE: MSMg01no381_h10.g1 PHD_FILE: MSMg01no381_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTC
TTGTCAAATGTAATGTAGAACCCAACATAAACCATCAACCTACATTCACT
CAGGAAATTGATGTAACTGTAACAATTCCTTTACAAAATCTTTTTCTGAC
CACTCCATGGAACAGTAGGTTCCTCTCCACTCCGGGTACCTGCTTGCACT
CCTCCCAAACAGGGAGGAGCAGGAGGGCACCATTTTTAAACTCTTTTCCT
GACCAATTAATGTAGATGCTATGAGCAAGTTTGTCCATCCGATGGGAGAG
AGTACTCTTGTATCATCCATTAAAAAGTTCTTCAATATTGAGAATAGAAA
AAGAGCATGCATCATAACATAGGAACCCTTCAAACATTCTAGTATTCCAG
AGTTACTGGAGGCACTCCTGGAGTGATTGGCAGAAATTTGTATTAAAGTT
CACTGAAAACAGGAATCAAACCTTCTCTGAAATCTAACAGCTCCATAATT
TCCAGTAACATCCCCTACACCCGTCCTAACTTTCATTTTCCCCTCCTGGA
CTGAATGCCTGCGACAAAGGGGGAATGGATAAGTGACGAAATTCCAGTTT
TTCCTCTCCATTCCAGCCAATGAAATTTCGAATTTGTTAACAAGGGAGAA
AAGGCCTCCCTTTAAAAAATTTAACAAAAACACTGCCATCTTTTTCCCCC
CCCCTGTTTCCCCCCTCCCTTTTCCCCCGTGCCTATACAATTAAAGCCCG
GAAG

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATGGGGCAGGATAGGGGGAATT
CTTCTGAGAACTGTTATCTTATTATGGTTATTTCTCTGAGAACAGCTAAT
ATTAGTTTGGCAGCTTGTAGGCTCAATCTTTTTGACTGCTAAAACTATGT
TTTTACATTTGTTTAGTCAGCCAGCTTCCTTATCTGACTCTGCACTTGGT
CTGCTAGTACAGTTTGGAAAGTCCTTTTCGAAGGGGGAAGGTACTGGGTG
GTCTTGAATTCATTTTGGATATTACAATACATATAGGCAAAACACTTACA
CACAAGTTTTTTTGAGAAATGAAAAATTAAATATGCTACATCTTCACTTC
TAACAAGTTATACTGATTTGAGGACCTCATAGTAGATAGTATAAAGAGAC
CAAGCCTGAAGAGGAAGAAGCACAAAGAGTAAGATCTCTTTTGCTTTTTC
TTTTAGCAGTGTGTGTGTGTTGGGCAGTATGTGCTATGATGAGTGTAAAA
TCCCAGGACAACTTTTGGGTTTTTTTATATACCATTTTTAAAAACTTATT
TAGGATTTTATGAAAGTACCCTGTACTGTTTCTTAACTCCCAAAAACGCT
TTCCATTTCTTTACAAGGGCCTTCTCTCCCCTCGTGCTTGTTTTTTATCC
TTAACTCCCTAAACCCTTCTGTTCCTTCTCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_h10.b1 MSMg01no381_h10.b1 CHROMAT_FILE:
MSMg01no381_h10.b1 PHD_FILE: MSMg01no381_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:53 2005
         (464 letters)



>mm_chr11_105043993_105044855
          Length = 863

 Score =  824 bits (426), Expect = 0.0
 Identities = 453/462 (98%), Gaps = 3/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttc-ttgtcaaatgtaatgtagaacccaacataaaccatcaacctacattca 62
           ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaattctttcatggt-aaatgtaatgtagaacccaacataaaccatcaacctacattca 605

                                                                       
Query: 63  ctcaggaaattgatgtaactgtaacaattcctttacaaaatctttttctgaccactccat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctcaggaaattgatgtaactgtaacaattcctttacaaaatctttttctgaccactccat 545

                                                                       
Query: 123 ggaacagtaggttcctctccactccgggtacctgcttgcactcctcccaaacagggagga 182
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 544 ggaacagtagtttcctctccactctgggtacctgcttgcactcctcccaaacagggagga 485

                                                                       
Query: 183 gcaggagggcaccatttttaaactcttttcctgaccaattaatgtagatgctatgagcaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcaggagggcaccatttttaaactcttttcctgaccaattaatgtagatgctatgagcaa 425

                                                                       
Query: 243 gtttgtccatccgatgggagagagtactcttgtatcatccattaaaaagttcttcaatat 302
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 424 gtttgtccatccgatgggagaaagtactcttgcatcatccattaaaaagttcttcaatat 365

                                                                       
Query: 303 tgagaatagaaaaagagcatgcatcataacataggaacccttcaaacattctagtattcc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgagaatagaaaaagagcatgcatcataacataggaacccttcaaacattctagtattcc 305

                                                                       
Query: 363 agagttactggaggcactcctggagtgattggcagaaatttgtattaaagttcactgaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agagttactggaggcactcctggagtgattggcagaaatttgtattaaagttcactgaaa 245

                                                     
Query: 423 acaggaatcaaaccttctctgaaatctaacagctccataatt 464
           | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 244 a-aggaatcaaaccttctctgcaatctaacagctccataatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space:   387262
Effective search space used:   387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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