BAC Information

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BAC

Clone NameMSMg01-381L02
Chromosome11 (Build37)
Map Location 62,737,946 - 62,738,112
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
Downstream geneCdrt4, Tekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381L02.T7 (MSMg01no381_l02.b1)MSMg01-381L02.TJ (MSMg01no381_l02.g1)
ACCAG485773AG485774
length734759
length of high quality
(start - end)
244 (37 - 280)170 (75 - 244)
definitionCHROMAT_FILE: MSMg01no381_l02.b1 PHD_FILE: MSMg01no381_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:11 2005CHROMAT_FILE: MSMg01no381_l02.g1 PHD_FILE: MSMg01no381_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
ACATCATAGATCAATGGAACCTATCAGACATCTATATACCTCATCTATAT
ACCATCCAAATACCTCAGGGGTATATATATATATATATATATATATATAT
ATATATATATATATATACACACACACACACACACATATATATATATACAC
ACACACATATATATATATATATATATATATACACACACACACACACACAC
ACACACATACATACAATTGGAGAAAAGATGGTATCTACAACAAATGGGAC
TGGGAAAACTATTTCTACATGGCTTTGTGTTTATCACAGATTTAAGAGGG
TGACTCCCCGGGGACCTTGGACATAGCCCGTGGCTTTATTGGCTATAATC
TTTATGCTGCAGGATAGGTTTTGGCGGAGCTAAGCGACCTATACCACGCC
TCCATATCGCTTCCATTCTATCCACATACCCGTTCCCAGGCGACTACCCG
AGGAGTTCAATACGATAGGGGGTCCTGCTCGCTCCCTTTGAGTGTCCCCC
AGCATCATTTCTGTTCTTTCTTCGGATTCCCCCATCTTCCCCTCCATTCT
CCCCTGTTGTGTCCGTTTAATCCCCCGCCACCCCTTACCCCCAGCACCCG
TTTTTCGGAGACATCCCCCTACTTTTCCCCACCCCTTGTTCCCCCTCTTT
TTTCCGCCGTTTTATACACTGTTTCGTGCTTATC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACATCGCCTTCGAACAGACAGCT
TGGGAGTTGGGGTCTTTAGGAACACAAGAATTTTCTTCACAGGAAGCAGT
GTGGGAGCAGGAACTGGAAAGAGGAGATAGCTACAAGAAGTTGGAGTTCT
GAGAACCCATAGATCCCTCTCAATGGGAGAAAACAAGCCATTNCCCCTCC
CAGGAATCCCCAGGGTCTTAAAGTTTTGGCCCCANATGGGCCNNAGAATG
TGGCCNAAGGGTTTTTTCCCCAGAGAAAGAAGGGCANAACCTTTAAGGGA
AAAANAGGGGGTGCCCCCCCATGTGGGGGGGGCCCCCGCCTTTTTAAACC
CTCCAAAAAACTCGCGGGGGGGACAAAAAAAAAAAGAGGGGGGGCCTCTT
CCCCCCCGGGGGGGGGGGGGGTGGGGGGTTTTTTAATTAAAAGGCGGGGG
CGGTGTTAAAAAACCCTTCTTTTTTANATTCCCCCCCCCACCGGGAGGGG
GGAAGGGTTTTTTTTCTTTTCCCCCCTCCTTTTGTTGTTGTGTAGTTAAA
ACTCNTCTCCCCTCAGGATGCTCCCCCCNCAGAAAAAGAAAAATATAACC
CTCCTGCGCTGCGGGGGGTGCTTTTCCCTTTTTTTTCCTCCTACCTATTA
AAATAATAAAAAAAAATAAAAAACTCTCTTTCTCTTTTCTTTTTCGCTTT
CACCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_l02.g1 MSMg01no381_l02.g1 CHROMAT_FILE:
MSMg01no381_l02.g1 PHD_FILE: MSMg01no381_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:11 2005
         (170 letters)



>mm_chr11_62737746_62738315
          Length = 570

 Score =  284 bits (147), Expect = 2e-81
 Identities = 162/167 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacatcgccttcgaacagacagcttgggagttggggtctttaggaacacaagaatttt 60
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 367 agaacatcgccttggaacagacagcttgggcgttggggtctttaggaacacaagaatttt 308

                                                                       
Query: 61  cttcacaggaagcagtgtgggagcaggaactggaaagaggagatagctacaagaagttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttcacaggaagcagtgtgggagcaggaactggaaagaggagatagctacaagaagttgg 248

                                                          
Query: 121 agttctgagaacccatagatccctctcaatgggagaaaacaagccat 167
           ||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 247 agttctgaggacccatggatccctctcaatgggagaaaacaggccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)