Query= MSMg01no381_m09.b1 MSMg01no381_m09.b1 CHROMAT_FILE:
MSMg01no381_m09.b1 PHD_FILE: MSMg01no381_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:17 2005
(249 letters)
>mm_chr11_63445422_63446072
Length = 651
Score = 451 bits (233), Expect = e-131
Identities = 246/251 (98%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 1 ggtagacagagaaggggtaactgactcccggtgagccaggtgggaagtgttggtgccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtagacagagaaggggtaactgactcccggtgagccaggtgggaagtgttggtgccagg 260
Query: 61 gtgtgagccacagggctcattttggttaattctgatgctcttttt--gccattgttttgt 118
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gtgtgaggcacagggctcattttggttaattctgatgctctttttttgccattgttttgt 320
Query: 119 ttttgaaacaggctagactcaaagattgggctagattgggaaatcctcctgcttcagaac 178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttttgaaacaggctagactcaaagattggtctagattgggaaatcctcctgcttcagaac 380
Query: 179 actgacattatatgctggtgtcaccacgtctagttacttctctttctgcttcccctttcc 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 actgacattatatgctggtgtcaccacgtctagttacttctcattctgcttcccctttcc 440
Query: 239 tcctctcctga 249
|||||||||||
Sbjct: 441 tcctctcctga 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space: 154080
Effective search space used: 154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no381_m09.g1 MSMg01no381_m09.g1 CHROMAT_FILE:
MSMg01no381_m09.g1 PHD_FILE: MSMg01no381_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:17 2005
(441 letters)
>mm_chr11_63568558_63569398
Length = 841
Score = 781 bits (404), Expect = 0.0
Identities = 432/442 (97%), Gaps = 4/442 (0%)
Strand = Plus / Minus
Query: 1 actgttgctctactcagacacaccagaagagggtataacatttcattacagatggttgtg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 743 actgttgctctactcagacacaccagaagagggtataacattccattacagatggttgtg 684
Query: 61 aaccatcatgcggttgctgggaattgaactcaggacctcaggaagaacagtcagtgctct 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 683 aaccatcatgcggttgctgggaattgaactcaggacctcgggaagaacagtca--gctct 626
Query: 121 taaccactgagccattctccagccttgaattgaagttctttaaagagcataaaaaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaccactgagccattctccagccttgaattgaagttctttaaagagcataaaaaagaaa 566
Query: 181 tgtttattccatcatctttgcatgtggacagtgaggactgtgtttgtctatgtgctttgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 tgtttattccatcatctttgcatgtggacagtgaggactgtgtttgtctatgtgctttat 506
Query: 241 gcagtgtactgtttgacatctgatagtccacaaggattgggggaggggtgtgtgaaaaac 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagtgtactgagtgacatctgatagtccacaaggattgggggaggggtgtgtgaaaaac 446
Query: 301 ccctgtaactgttgctctgtcctgttgctcacttcttgagtaccacttggtcaggcttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctgtaactgttgctctgtcctgttgctcacttcttgagtaccacttggtcaggcttca 386
Query: 361 tcttctcatggacacagagtcctggtagctggatcacgtccgtttttgttgttgttgttg 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 tcttctcatggacacagagtcctggtagctggatcatgtccgtttttgttgttgttgttg 326
Query: 421 ttgtt-ttg-tttgtttgtttg 440
||||| ||| ||||||||||||
Sbjct: 325 ttgttgttgttttgtttgtttg 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
