BAC Information

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BAC

Clone NameMSMg01-382D13
Chromosome11 (Build37)
Map Location 46,176,414 - 46,176,924
singlet/doubletsinglet
Overlap geneItk
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577
Downstream geneOTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382D13.T7 (MSMg01no382_d13.b1)MSMg01-382D13.TJ (MSMg01no382_d13.g1)
ACCAG486177AG486178
length948763
length of high quality
(start - end)
---513 (56 - 568)
definitionCHROMAT_FILE: MSMg01no382_d13.b1 PHD_FILE: MSMg01no382_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:54 2005CHROMAT_FILE: MSMg01no382_d13.g1 PHD_FILE: MSMg01no382_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATCTTATATTAAACACCTGAAGACACCGGGCAGAAGGCGAAGACACC
GACGGCGTAGCGGAGAGACAGGAACGGGCGGGAGAGACGGGGGGCAGAGA
GCGAGCCGTCGGGAGCATCTCGCGGCACAGAGAGAGACGGAGGGGGGGGG
CGGGGGCGGGGGGGGGGGGGGAGGGGGGTGAGGCGAGGGAGTCGAAGTCT
GGAAACGAACAGACTGACCTTACCCCTGTTCCATACACTCGTCTATTATG
AATAATGTAATCTATTATAGTACATAATCTAGCTGCTTAGGCTGCGTGCG
GACGGTACACGGGCGTGAGGGAGCGCGACGACGCTGGCGAGCTAGAGTCG
CATTGCGGTCGGTTGCGAGGGACCATCGTGTGCGTGTGTCTGACTGCTAT
TTGTTAATGAGGTGAGTGAGGGAGGTGTATTCCCTGTCACATGGCTGCGC
AGTTAAATAAGATGGAGGCTGGGTCGAACCCCCTCACATCATTTTAATTT
ACGGCGGGCTGCGGTCGCGGGCGCGACGTGCGAGCGCTGGCGCGATGTTG
GGTGCTTGTGCAGACCCAGACACGATCTGTTACATATATAGACCGGTTAG
CTGCTGACTTACGCACATATCAGCGTACGTCAAGCCCGTGTCGGACCATG
ATCCGCATAGCACGGACCTATGTCCGCAGCTATCGGCTTTCTAATTATAG
CAACTCCGTAGTTGCGCCCGCACGGTTACCCCGAGGTGCTGCAGAGAGAG
GCGGGCGTTGACCGTGATAGGAGAACGCTGTATCAGTCGGTCCAATATGC
CGTGTGCGTGGTTGTCAGGGCGAGCGGTTCGGGCGCTGTTGCGGCGTCCG
AATGGCTATACCGGATGAGTGCGCGCCACACGTGAGCTGTATTAGANTCT
CTGCGAGCGGACGCGTATGATCTCTCGATCGTTATCTGTACACTCGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTCTGTAGACCCAGCTGGCCTAGAACTCACAGAGATCTGCCTGC
CTCTGCCTCCCGAGTGTTGGAATTAAAATATGTGCCACCACTGCCCAGGT
TGTCTTCTTAGATCTTTAAGTATTGAGATAGCCAAGTACACAGTATTTAT
TTCTTTTAGTGACGTCACACCATGCATATGTCTAATTATATAATTCAACT
CTAAAGGCTTAAGGGAGAGAGAAAAAACTTCTCCTTAATTTTAACTCTGG
CTTCTTCCTTCCTGACCTTCAGGCTTGCCTTTGACCTACATAGGCTCAGA
GAAAATGAATCCATAAAAGAAATGCAAAGTAGAAACAAAAAAAAAAAAGT
TTGTTTTTGGTTTTTCCATCAAAAGCTCAGCCCTGGGGTTTAGACTGTGT
CTTGATTTTTATCTAATACCACGGCAACTTGGAGACCTCCACCTCCCACC
AACTGTAGCTCTACTCAAATGCACTTCACAGCATCGTTCTTTGCGTCTTC
ATAGCTGTCTCAGGTGAGATGTACAACCTTGTGCAGTTCAAGGTCACATG
ATTAATTGCTGTACTTGCGTTTTTCTCATCTCTCAGCCTCTCCCTACACT
GATACTATTTCTCACCCTGTGGTTTTTACTGCCCTAACACGAGGCGGATA
TAACACAAAGATGGGGTTTTCCTGGCTTCCTGAGTCCAAAACTCCCCCCG
CCCCTTTAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_d13.g1 MSMg01no382_d13.g1 CHROMAT_FILE:
MSMg01no382_d13.g1 PHD_FILE: MSMg01no382_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:54 2005
         (513 letters)



>mm_chr11_46176121_46177031
          Length = 911

 Score =  965 bits (499), Expect = 0.0
 Identities = 509/513 (99%), Gaps = 2/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagacccagctggcctagaactcacagagatctgcctgcctctgcctcccgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actctgtagacccagctggcctagaactcacagagatctgcctgcctctgcctcccgagt 745

                                                                       
Query: 61  gttggaattaaaatatgtgccaccactgcccaggttgtcttcttagatctttaagtattg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 744 gttggaattaaaatatgtgccaccactgcccaggttgtcttcttagatctttaagtatag 685

                                                                       
Query: 121 agatagccaagtacacagtatttatttcttttagtgacgtcacaccatgcatatgtctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agatagccaagtacacagtatttatttcttttagtgacgtcacaccatgcatatgtctaa 625

                                                                       
Query: 181 ttatataattcaactctaaaggcttaagggagagagaaaaaacttctccttaattttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttatataattcaactctaaaggcttaagggagagagaaaaaacttctccttaattttaac 565

                                                                       
Query: 241 tctggcttcttccttcctgaccttcaggcttgcctttgacctacataggctcagagaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctggcttcttccttcctgaccttcaggcttgcctttgacctacataggctcagagaaaa 505

                                                                       
Query: 301 tgaatccataaaagaaatgcaaagtagaaacaaaaaaaaaaaagtttgtttttggttttt 360
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 504 tgaatccataaaagaaatgcaaagtagaaac--aaaaaaaaaagtttgtttttggttttt 447

                                                                       
Query: 361 ccatcaaaagctcagccctggggtttagactgtgtcttgatttttatctaataccacggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 ccatcaaaagctcagccctggggtttagactgtgtcttgatttttatctaataccatggc 387

                                                                       
Query: 421 aacttggagacctccacctcccaccaactgtagctctactcaaatgcacttcacagcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacttggagacctccacctcccaccaactgtagctctactcaaatgcacttcacagcatc 327

                                            
Query: 481 gttctttgcgtcttcatagctgtctcaggtgag 513
           |||||||||||||||||||||||||||||||||
Sbjct: 326 gttctttgcgtcttcatagctgtctcaggtgag 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 911
Length adjustment: 10
Effective length of query: 503
Effective length of database: 901
Effective search space:   453203
Effective search space used:   453203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)