BAC Information

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BAC

Clone NameMSMg01-384A08
Chromosome8 (Build37)11 (Build37)
Map Location 90,394,478 - 90,394,68390,503,416 - 90,503,714
singlet/doubletsingletsinglet
Overlap geneZfp423
Upstream geneBC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384A08.T7 (MSMg01no384_a08.b1)MSMg01-384A08.TJ (MSMg01no384_a08.g1)
ACCAG487555AG487556
length738733
length of high quality
(start - end)
209 (37 - 245)299 (230 - 528)
definitionCHROMAT_FILE: MSMg01no384_a08.b1 PHD_FILE: MSMg01no384_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:13 2005CHROMAT_FILE: MSMg01no384_a08.g1 PHD_FILE: MSMg01no384_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:13 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,394,478 - 90,394,683)(90,503,416 - 90,503,714)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGC
TTCTGCCATCCTCTCCGAGGGCTCCGAAGAGCACTTTCCAAAAGCTCAGG
GGCCCACCAGGCCAACTCTGCCTCGCCAGCCAGGACCACCCTAAATAAGT
CCTACACCTTGCTTCCTGCCTGCCCCCATGTTCCCATGTACCAAGTACAG
TGGGCACTCGTTAAATACACCTCCTGCTATTGATCACCGCAGTTTGTTGG
ACCAGCCTCGCTTGCCCTTTAGCATCCAGCATAAGATCTGGTACACAGTA
GGTGCTCCTGAAAAAAATACCAACCCTCAACAATTTGAGACTTGTGAGCC
CAGTATGGTGGCACAGCACTCACGAGGCAGGAAGGTACGAGGATCTCTGT
GAGATCAAGGACACCCTGGGCTACATATACATCCAAGAACAGCCCAAGGT
ACATAATGAAGCCCTGTCTCAAGAAAGAGAATGAACGAAGGATGCAAGTA
GGGAGGCTATATGTANAGGAATCAATATGTGAGACTGGAAAAGACTGTGC
ATGGTTTCTACAAGTTACTCACAAGGAAAGGAACGTGAGTGTGTCATTAT
CTTTCCTCTAAACTTGTTTTAAGCCTGGCCTTTATTATCTGTGATCCCCA
ATCCCTATTGTTATATAAGATCAAAAAACGGTGGGAAATTTTTTAATATT
CCTATGGGTATTAATGATTATCCGGACGACTTCATTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGACAGCCAGGGACACACAGAACAATCTTGTC
TCATAAAAACAAGCAAGCAAGCAAACGAACAATATACCACCACTACCCTC
ATAAGAATTAAATGGATCTGGTGTCTGGTTTGAGTGGGTGGTTCTAGAGG
TAGGATTTTGGAGAGTGATTGGATTGGTTTGGTCCTGCCTCAACTTAGCC
TAGCTTGCTATTTTTCTTGATTTCTCCATGCATTAACTTTTGTTTTAAAC
AAAAGTTTTATTCAGTCAGTTTTATTCTGGTTGTAAACTTATTGTATTAC
AATTTAAGATTTAAGGTCAGTTCAACATTGATATCCCCTTTAAGAAATTC
AACTATGGCATTAAGGTCTATGTGATTTAGAGGTATAGAGGCATGTACTT
TGTATGGTGCTGACTATATTTTAACTTTTAATAACCTGGAACAAAGTCAT
GTGTTTATAATCGTGATTAAAAGCTGATTGAATCCCTTGGTCATTAATGT
TGAATTTATACAGTACCTAGTTATGGTATATAGCTTTCTGATTTTTACTC
TGGGGGATTAGAGGAATTCACAAAATGGGGTTTATCCCAATTTTTAAAGT
AACTCCTGTTTTTTCCCCTTTTTTTGTTCTCCTTTATTCTTATTATGTTA
TATTCTTCCTCTTTTCGCTTTTCTTTTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_a08.b1 MSMg01no384_a08.b1 CHROMAT_FILE:
MSMg01no384_a08.b1 PHD_FILE: MSMg01no384_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:13 2005
         (209 letters)



>mm_chr8_90394275_90394883
          Length = 609

 Score =  383 bits (198), Expect = e-111
 Identities = 204/206 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcttctgccatcctctccgagggctccgaagagcactttccaaaagctcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcttctgccatcctctccgagggctccgaagagcactttccaaaagctcag 263

                                                                       
Query: 64  gggcccaccaggccaactctgcctcgccagccaggaccaccctaaataagtcctacacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggcccaccaggccaactctgcctcgccagccaggaccaccctaaataagtcctacacct 323

                                                                       
Query: 124 tgcttcctgcctgcccccatgttcccatgtaccaagtacagtgggcactcgttaaataca 183
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 324 tgcttcctgcctgcccccatgttcccatgtaccaagtatagtgggcacttgttaaataca 383

                                     
Query: 184 cctcctgctattgatcaccgcagttt 209
           ||||||||||||||||||||||||||
Sbjct: 384 cctcctgctattgatcaccgcagttt 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no384_a08.g1 MSMg01no384_a08.g1 CHROMAT_FILE:
MSMg01no384_a08.g1 PHD_FILE: MSMg01no384_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:13 2005
         (299 letters)



>mm_chr11_90503216_90503914
          Length = 699

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcctgcctcaacttagcctagcttgctatttttcttgatttctccatgcattaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcctgcctcaacttagcctagcttgctatttttcttgatttctccatgcattaactt 260

                                                                       
Query: 61  ttgttttaaacaaaagttttattcagtcagttttattctggttgtaaacttattgtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttaaacaaaagttttattcagtcagttttattctggttgtaaacttattgtatta 320

                                                                       
Query: 121 caatttaagatttaaggtcagttcaacattgatatcccctttaagaaattcaactatggc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 caatttaagatttaaggtcagttcaacattgatagcccctttaagaaattcaactatggc 380

                                                                       
Query: 181 attaaggtctatgtgatttagaggtatagaggcatgtactttgtatggtgctgactatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaggtctatgtgatttagaggtatagaggcatgtactttgtatggtgctgactatat 440

                                                                      
Query: 241 tttaacttttaataacctggaacaaagtcatgtgtttataatcgtgattaaaagctgat 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaacttttaataacctggaacaaagtcatgtgtttataatcgtgattaaaagctgat 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)