BAC Information

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BAC

Clone NameMSMg01-384B17
Chromosome11 (Build37)
Map Location 68,683,715 - 68,836,287
singlet/doubletdoublet
Overlap gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik
Upstream geneUsp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1
Downstream geneAurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B17.T7 (MSMg01no384_b17.b1)MSMg01-384B17.TJ (MSMg01no384_b17.g1)
ACCAG487621AG487622
length746743
length of high quality
(start - end)		523 (33 - 555)421 (61 - 481)
definitionCHROMAT_FILE: MSMg01no384_b17.b1 PHD_FILE: MSMg01no384_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:19 2005CHROMAT_FILE: MSMg01no384_b17.g1 PHD_FILE: MSMg01no384_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,683,715 - 68,684,233)(68,835,867 - 68,836,287)
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAATGT
CTCTTCCAACCACACAGCCTCAACAATCTATCTCCTAAGAATTCATTCTA
AGGAAATGCCGGAGCTGGTATGTGAAGATTGTATGTTTAATGGTGTTTTC
TGCAGTGCAGCTTACTTTTATAGACTCACACTGAAAGCCTATCACTACCC
ACAAATCAGTTTACTTTACCAAGCCATGCATGCTACATCCACACATGGGA
TATGGTACAGCAGTCCAGGACAGGGTGGATATTTGTGAATCAGCATACGA
TGACTCAAAAGACATTAAATGCAAAGAAGTTACAGGACGGTAAGTAGAAT
TCAACATTAAAAAATTTATTGAAAGTGTGTATGTCAGCTGGGTGTGATGG
CTCATGCCTGTAATCCTCACACTGGATGGGTGTGCACAGGAGGAGTCAGG
GTTCAAGGTCAACATCATAGCCTGTCTCAAAAGCATGTGTATTTTGAGGC
CAGGTGAGGTTGTTGGGAGCGGGTGAGGCTGCACACACCAGTGATTCTAG
CACCCAGAAGGCAGAGGCAGGTAAATCAAGACAGACCCAAGGCCAACCTG
ATCTGCATAGCAAATCTATACCAGCCCAGACTAATAAATGTGAGCCCCTG
GCTCAAAGGGGACTGACTGTGGGGGGTTGTCCTTCTCTTACAACATTTTT
TATTAACTCACTTTTTTTTCCCCCACTTCCCTTTCTTTTTTTACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTCTTGGCAGAAGGAAGGTAACTCCAACTGGGGAATAGGA
AGAGATGGCCCAACCAAGAAAGGTCTAGATCAATGAGCTAGAAAAGAGCA
AAGCCACAGGTTAGCCAGGACCTTAGCAGCTGACCTACCGCTCCTGCTCA
CCCCAGAGGCAGCTGTCCCCTTTCTACTTACCTCACAGTCCAAGGTCCCA
GTGTTATCCCTTACATACAGGCTTCCACTCCTACATTCTTGTTCCGAATC
TCCCAATAGGTCTACTAGTGTCCCTAAAAGTATCAGCTGCTCCCGGGGCA
GGACGCCGTCCCCCGGCCGGCCTCCGCGGGTCCACGCCTGGTAAGCACTC
TGACTCCAGGACAGGTGGCTGCAGCACGGGAGGCGCTGATGGGTCTTCAG
ACTCTGTACCGAGACAAAGCTGAAAAGTGAAGAAAGTCAGCTTCATCCGA
GAAAAGACTCCGTCCCGACAGAGCCCCACGCACCCTAAACAGGGGCTGAT
TGAGAATGGGGACCCCGCGATGGCTGCCGCGAAATTAAATGACGGACTCT
TAATCTAAAGGTTGGGCCATGGTTCCTATGGAAACCATAAATCCTTGCCA
TGATTTTCTCCTAACGGGGGACCCTCCTACTATTGGAACCTATTTGCCGT
GAACCGTTCGCATTATATATTCTGCGTTTCCGATTACACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b17.b1 MSMg01no384_b17.b1 CHROMAT_FILE:
MSMg01no384_b17.b1 PHD_FILE: MSMg01no384_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
         (523 letters)



>mm_chr11_68683511_68684433
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaatgtctcttccaaccacacagcctcaacaatctatctcctaagaattcat 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaatgggtcttccaaccacacagcctcaacaatctatctcctaagaattcat 264

                                                                       
Query: 65  tctaaggaaatgccggagctggtatgtgaagattgtatgtttaatggtgttttctgcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaaggaaatgccggagctggtatgtgaagattgtatgtttaatggtgttttctgcagt 324

                                                                       
Query: 125 gcagcttacttttatagactcacactgaaagcctatcactacccacaaatcagtttactt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagcttacttttatagactcacactgaaagcctatcactacccacaaatcagtttactt 384

                                                                       
Query: 185 taccaagccatgcatgctacatccacacatgggatatggtacagcagtccaggacagggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccaagccatgcatgctacatccacacatgggatatggtacagcagtccaggacagggt 444

                                                                       
Query: 245 ggatatttgtgaatcagcatacgatgactcaaaagacattaaatgcaaagaagttacagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggatatttgtgaatcagcatacgatgactcaaaagacattaaatgcaaagaagttacagg 504

                                                                       
Query: 305 acggtaagtagaattcaacattaaaaaatttattgaaagtgtgtatgtcagctgggtgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acggtaagtagaattcaacattaaaaaatttattgaaagtgtgtatgtcagctgggtgtg 564

                                                                       
Query: 365 atggctcatgcctgtaatcctcacactggatgggtgtgcacaggaggagtcagggttcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggctcatgcctgtaatcctcacactggatgggtgtgcacaggaggagtcagggttcaa 624

                                                                       
Query: 425 ggtcaacatcatagcctgtctcaaaagcatgtgtattttgaggccaggtgaggttgttgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtcaacatcatagcctgtctcaaaagcatgtgtattttgaggccaggtgaggttgttgg 684

                                                  
Query: 485 gagcgggtgaggctgcacacaccagtgattctagcaccc 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcgggtgaggctgcacacaccagtgattctagcaccc 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_b17.g1 MSMg01no384_b17.g1 CHROMAT_FILE:
MSMg01no384_b17.g1 PHD_FILE: MSMg01no384_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
         (421 letters)



>mm_chr11_68835667_68836487
          Length = 821

 Score =  799 bits (413), Expect = 0.0
 Identities = 419/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttggcagaaggaaggtaactccaactggggaataggaagagatggcccaaccaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttggcagaaggaaggtaactccaactggggaataggaagagatggcccaaccaagaa 562

                                                                       
Query: 61  aggtctagatcaatgagctagaaaagagcaaagccacaggttagccaggaccttagcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtctagatcaatgagctagaaaagagcaaagccacaggttagccaggaccttagcagc 502

                                                                       
Query: 121 tgacctaccgctcctgctcaccccagaggcagctgtcccctttctacttacctcacagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacctaccgctcctgctcaccccagaggcagctgtcccctttctacttacctcacagtc 442

                                                                       
Query: 181 caaggtcccagtgttatcccttacatacaggcttccactcctacattcttgttccgaatc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggtcccagtgttatccctcacatacaggcttccactcctacattcttgttccgaatc 382

                                                                       
Query: 241 tcccaataggtctactagtgtccctaaaagtatcagctgctcccggggcaggacgccgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaataggtctactagtgtccctaaaagtatcagctgctcccggggcaggacgccgtc 322

                                                                       
Query: 301 ccccggccggcctccgcgggtccacgcctggtaagcactctgactccaggacaggtggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccggccggcctccgcgggtccacgcctggtaagcactctgactccaggacaggtggct 262

                                                                       
Query: 361 gcagcacgggaggcgctgatgggtcttcagactctgtaccgagacaaagctgaaaagtga 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcatgggaggcgctgatgggtcttcagactctgtaccgagacaaagctgaaaagtga 202

            
Query: 421 a 421
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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