Query= MSMg01no384_f07.b1 MSMg01no384_f07.b1 CHROMAT_FILE:
MSMg01no384_f07.b1 PHD_FILE: MSMg01no384_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:36 2005
(492 letters)
>mm_chr11_120725341_120726232
Length = 892
Score = 851 bits (440), Expect = 0.0
Identities = 481/506 (95%), Gaps = 24/506 (4%)
Strand = Plus / Plus
Query: 4 ggaattcatcaggctggactcaaactcacagatatctgcctactt--aaaaaaaaaatta 61
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 194 ggaattcatcaggctggactcaaactcacagatatctgcctacttaaaaaaaaaaaatta 253
Query: 62 c--------------cacacacacacacacacacgagttatttaacttagcttttatttt 107
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccacacacacacacacacacacacacacacacacgagttatttaacttagcttttatttt 313
Query: 108 atttatttatttatttttttaaaaagatttatttatttattatgtaagtacaccgtagct 167
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atttat---ttt-ttttttt--aaagatttatttatttattatgtaagtacaccgtagct 367
Query: 168 gtcttcagacactccagaagagggtgacccctctcctcttctggatctcgttatggatgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtcttcagacactccagaagagggtgacccctctcctcttctggatctcgttatggatgg 427
Query: 228 ttgtgagccaccatgtggttgctgggatttgaactcaggaccttcggaagagcagtcagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgtgagccaccatgtggttgctgggatttgaactcaggaccttcggaagagcagtcagt 487
Query: 288 gctcttaaccgctgagccatctctccagccccttagcttttattttacaggatcccacag 347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctcttaactgctgagccatctctccagccccttagcttttattttacaggatcccacag 547
Query: 348 ttgaaagaatttggttttctaaacgggatttttgaacttttagtgtttaaactttgttat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgaaagaatttggttttctaaacgggatttttgaacttttagtgtttaaactttgttat 607
Query: 408 gtttttcttttctcttctttt-aaggcagttttttaaaaaaggtttttattagggatgag 466
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 608 gtttttcttttctcttctttttaag-cagttttttaaaaaaggtttttattagggatgag 666
Query: 467 gaaatacagcaggcacagagataaaa 492
||||||||||||||||||||||||||
Sbjct: 667 gaaatacagcaggcacagagataaaa 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_f07.g1 MSMg01no384_f07.g1 CHROMAT_FILE:
MSMg01no384_f07.g1 PHD_FILE: MSMg01no384_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:36 2005
(484 letters)
>mm_chr11_120926542_120927425
Length = 884
Score = 882 bits (456), Expect = 0.0
Identities = 477/484 (98%)
Strand = Plus / Minus
Query: 1 ttgtaggaaccttcaaaggacacctggacagatgctgactgccctcacacaggtttgtcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 ttgtaggaaccttcaaaggacacctggacagatgctgcctgccctcacacaggtttgtcc 625
Query: 61 tcatagagtaggaagctagtcccaagaaacacgtctgcacctacactgtactgcgttctg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 tcatagagtaggaagctagtcccaagaaacatgtctgcacctacactgtactgcgttctg 565
Query: 121 tgtcatgggacctcaaactcaccaccagcacagtgaacagttctgccactcgggcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtcatgggacctcaaactcaccaccagcacagtgaacagttctgccactcgggcaggaa 505
Query: 181 cgtgctctgggccatgcgtccctgtatgatggcgtacatgcgttgtccgagtgtgcccat 240
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 504 cgtgctctgggccatgcgtccctgtatgatggcgtacatgagttgtcccagtgtgcccat 445
Query: 241 gagatcacccccacacagagacgaacagcgactctgtcattagcatgagaagacagtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagatcacccccacacagagacgaacagcgactctgtcattagcatgagaagacagtaag 385
Query: 301 tagactctaggacagtgcatgctcctcgtgctgttctgggggtcagggccagcagggtca 360
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 tagattctaggacagtgcatgctcctcctgctgttctgggggtcagggccagcagggtca 325
Query: 361 ttgaccctgggtctggacacagcttgtcacttgcgtcctaggagaaggaccactctgtgg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 ttgaccctgggtctggacacagcttgtcacttgtgtcctaggagaaggaccactctgtgg 265
Query: 421 tgccttctggctgtccattggtccagatgacctgcctctgctgtgcttccagggcagtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgccttctggctgtccattggtccagatgacctgcctctgctgtgcttccagggcagtca 205
Query: 481 cagc 484
||||
Sbjct: 204 cagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
