Query= MSMg01no384_i01.b1 MSMg01no384_i01.b1 CHROMAT_FILE:
MSMg01no384_i01.b1 PHD_FILE: MSMg01no384_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:49 2005
(187 letters)
>mm_chr11_114037335_114037921
Length = 587
Score = 319 bits (165), Expect = 6e-92
Identities = 176/183 (96%), Gaps = 6/183 (3%)
Strand = Plus / Minus
Query: 5 gaattctccaaatagccctccccagacagaagggtagtcttgccaagagagcaagggcta 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaattctccaaacagccctccccagacagaagggtagtcttgccaagagagcaagggcta 253
Query: 65 taaagtttccctgcatagctcctagatagatacatctaatgttgccaccaaaaacaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taaagtttccctgcatagctcctagatagatacatctaatgttgccaccaaaaacaaaaa 193
Query: 125 caaaaacaaaaacaaaacgaaaaaacaaacaaaacaaaacaaaagaaccagtgagatccc 184
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Sbjct: 192 caaaaacaaaa------cgaaaaaacaaacaaaacaaaacaaaagaaccagtgagatccc 139
Query: 185 tgg 187
|||
Sbjct: 138 tgg 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no384_i01.g1 MSMg01no384_i01.g1 CHROMAT_FILE:
MSMg01no384_i01.g1 PHD_FILE: MSMg01no384_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:49 2005
(403 letters)
>mm_chr11_113876814_113877616
Length = 803
Score = 731 bits (378), Expect = 0.0
Identities = 402/418 (96%), Gaps = 15/418 (3%)
Strand = Plus / Plus
Query: 1 tctctttcccttccctctagaccttctcct------------tcttcctcctcctcct-c 47
|||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 186 tctctttcccttccctctagaccttctccttcctcctcctcctcttcctcctcctcctcc 245
Query: 48 t--tcctcatcccttctcctcctcctacctcctccttccactttcttccttccttctccc 105
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcctcctcctcccttctcctcctcctacctcctccttccactttcttccttccttctccc 305
Query: 106 ccttcttccctttcctcttcctacatcctctcgtttctcccccactgccggctggctttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttcttccctttcctcttcctacatcctctcgtttctcccccactgccggctggctttc 365
Query: 166 cagcctacctgccattctctggagccagaacggcctgcttctctccttcccacccattgc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagcctacctgccattctctggagccagaacggcctgcttctctccttcccacccattgc 425
Query: 226 ctttatttatttatatcctcttcagagagaaggtgagagtgtgtctggatcaattcatcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttatttatttatatcctcttcagagagaaggtgagagtgtgtctggatcaattcatcc 485
Query: 286 tctgtcgagcctcccagccctctcccccttgctgagaccaaaagcgtaaactccttctgg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctgtcgagcctcccagccctctcccccttgctgagaccaaaagcgtaaactccttctgg 545
Query: 346 ctattaattaaaagcagcctctccctccgcgccggcgtactccataaattaatagcgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctattaattaaaagcagcctctccctccgcgccggcgtactccataaattaatagcgg 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
