BAC Information

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BAC

Clone NameMSMg01-384N15
Chromosome11 (Build37)
Map Location 61,460,728 - 61,626,239
singlet/doubletdoublet
Overlap geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Upstream geneLOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N15.T7 (MSMg01no384_n15.b1)MSMg01-384N15.TJ (MSMg01no384_n15.g1)
ACCAG488190AG488191
length757763
length of high quality
(start - end)
532 (32 - 563)408 (64 - 471)
definitionCHROMAT_FILE: MSMg01no384_n15.b1 PHD_FILE: MSMg01no384_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:14 2005CHROMAT_FILE: MSMg01no384_n15.g1 PHD_FILE: MSMg01no384_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,625,712 - 61,626,239)(61,460,728 - 61,460,895)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTATGTGT
GGAGGGTATGTTTCCATAGCTCACCACAGAGCTTTCGTCTTGGGTCTGGG
GAAGAATTCAGCTGGTAGAGTGCTTTTCTAGCGTGCACAGAGCTGTAGGT
TCCACTGCAGGAGCACAGAGGTGAGGTCTGTGGCACACCATTGTAATCTT
AGCACCTAGAAGGGGGGAGGGAGGCAGGATGATGAGAAGTTCTAATTTTA
AAAAAGATTTTTGATATTTTGTTATTTGAGTGGCTTTATTTAACCTTTTA
TTCTTGATTTAATTTTTGTTTCACAATTTACACATATATGCATTCATGTA
TATTAACACACATACATATTATTTGGGGAGCTTTTGGTTCATTTGTTCAG
ACATAATACATAAGCACTTCTATTGAACTGTATGCCCAGCCATTACAATT
TGTTTTTCATTTTGAGATAGCATTTGCTAAGTTACCTAGGCTAGCCTTGA
ACTCACTGAAACCCAAGCTAACTTTTAACTTGTAGTTCTCCTGTCTTAGT
CTCTTGAGCAGGCTTGTACTGCCAAGAAAAGCTTACAATTTCTTTCTTTC
TTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTTCTTCCCTTCC
TTCTTCCATTCTTCCCTCCCACCCTCCACCCCCTCCTTCCTTTCTTTCCT
TCCTTTCTTTCTTACCAACCACATCTCTTTTACCTCCTTCCAATCATTAT
TTCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAGATGGGGGTGCATGCCTTTGGTCCCAGCACTTGG
GAGGCAGGAGTAGGTGGATCTTTGTGAGTCTGAGGCTACAGAGGCAGAGC
ATGTTCCAGGGGGGCCATGCCACACAGAGAAACCCCTACGGCGGGGAAGG
GGTGCAATTTAGAGACAAGCAAAGTAAGACATTCAAAGGGAGCTTATTAC
AGAGATGAGGTACATACCCAAAGGGGGCATGCAGTCTTTCCGGGATCCTA
GATAGCTCATACTATAGATAAACTTGAGGGAGGATTAGGCATAAATTAAG
ATGGGGAACTCCATAATGGGGAGGGTTTTCCCCCGTGGGGTTTACTCTCC
ACTTCTATTCTTACATGGGGTTTTCCAGGTGCTTCATGGGTAAGATGTGT
GTTGGGAGTAGGGGTTTTTTNTTTTTTTTTNTTNTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCCCGT
TTCCTCTCCCCCCCCTTTTTTTCTCCTTTCTCCCCCTCCTTTTTTTCTTT
TGTTCTTTCTTTTTTTTCTCTTTTTTTCCTCCCCTTCTCTTTCCTCTCCT
CTTTTTCCCCTCCTTTCTCTTCTCCCCGTCTCTTTTTTTTTCCCCCTCCT
CTCCTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n15.b1 MSMg01no384_n15.b1 CHROMAT_FILE:
MSMg01no384_n15.b1 PHD_FILE: MSMg01no384_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:14 2005
         (532 letters)



>mm_chr11_61625416_61626347
          Length = 932

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatgtgtggagggtatgtttccatagctcaccacagagctttcgtcttgggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gaattctttatgtgtggagggtatgtttccatagctcaccacagagctttcgtcttgggt 765

                                                                       
Query: 65  ctggggaagaattcagctggtagagtgcttttctagcgtgcacagagctgtaggttccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctggggaagaattcagctggtagagtgcttttctagcgtgcacagagctgtaggttccac 705

                                                                       
Query: 125 tgcaggagcacagaggtgaggtctgtggcacaccattgtaatcttagcacctagaagggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 704 tgcaggagcacagaggtgaggtctgtggcacaccattgtaatcttagcacctagaagggt 645

                                                                       
Query: 185 ggagggaggcaggatgatgagaagttctaattttaaaaaagatttttgatattttgttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggagggaggcaggatgatgagaagttctaattttaaaaaagatttttgatattttgttat 585

                                                                       
Query: 245 ttgagtggctttatttaaccttttattcttgatttaatttttgtttcacaatttacacat 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttgagtgcctttatttaaccttttattcttgatttaatttttgtttcacaatttacacat 525

                                                                       
Query: 305 atatgcattcatgtatattaacacacatacatattatttggggagcttttggttcatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atatgcattcatgtatattaacacacatacatattatttggggagcttttggttcatttg 465

                                                                       
Query: 365 ttcagacataatacataagcacttctattgaactgtatgcccagccattacaatttgttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttcagacataatacataagcacttctattgaactgtatgcccagccattacaatttgttt 405

                                                                       
Query: 425 ttcattttgagatagcatttgctaagttacctaggctagccttgaactcactgaaaccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttcattttgagatagcatttgctaagttacctaggctagccttgaactcactgaaaccca 345

                                                           
Query: 485 agctaacttttaacttgtagttctcctgtcttagtctcttgagcaggc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agctaacttttaacttgtagttctcctgtcttagtctcttgagcaggc 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no384_n15.g1 MSMg01no384_n15.g1 CHROMAT_FILE:
MSMg01no384_n15.g1 PHD_FILE: MSMg01no384_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:15 2005
         (408 letters)



>mm_chr11_61460290_61461097
          Length = 808

 Score =  317 bits (164), Expect = 7e-91
 Identities = 167/168 (99%)
 Strand = Plus / Plus

                                                                       
Query: 239 atagctcatactatagataaacttgagggaggattaggcataaattaagatggggaactc 298
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 atagctcatactatagataaacttgagggaggactaggcataaattaagatggggaactc 498

                                                                       
Query: 299 cataatggggagggttttcccccgtggggtttactctccacttctattcttacatggggt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cataatggggagggttttcccccgtggggtttactctccacttctattcttacatggggt 558

                                                           
Query: 359 tttccaggtgcttcatgggtaagatgtgtgttgggagtaggggttttt 406
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttccaggtgcttcatgggtaagatgtgtgttgggagtaggggttttt 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)