BAC Information

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BAC

Clone NameMSMg01-385P14
Chromosome11 (Build37)
Map Location 121,515,424 - 121,701,581
singlet/doubletdoublet
Overlap geneB3gntl1, Metrnl, Ptchd3
Upstream gene5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
Downstream geneLOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385P14.T7 (MSMg01no385_p14.b1)MSMg01-385P14.TJ (MSMg01no385_p14.g1)
ACCAG489049AG489050
length751738
length of high quality
(start - end)		551 (33 - 583)588 (61 - 648)
definitionCHROMAT_FILE: MSMg01no385_p14.b1 PHD_FILE: MSMg01no385_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:41 2005CHROMAT_FILE: MSMg01no385_p14.g1 PHD_FILE: MSMg01no385_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,701,035 - 121,701,581)(121,515,424 - 121,516,009)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTGAGA
CTACAGCTGGGTCTGCTTGCACTTGTGTGTGCTTTTATTCCCATGTGTAT
TTACAGTAAGTCTTGGAACTGCAATGTTGATCTCTACTTCTTTTTCATAG
ATTACAAGTTAAGGTGGGAGATACTTGGAATCACAAGCTGGCCTGTAGTT
CAGATATTCATGTACATGATGGAGGGAGAAAGATCCAAAACTTGCACAAA
GATAGAGGGATTGTCATAAACTGTATAGTGGCACCCCAGGACTAGCACCT
CTCAAGTCTCCAGCTGAACAAAGGGAACAATTAGAGACACTGAGGACCAA
GAATGGAATGCATCGGTCTCTTAGATGTTTAAGAACTGACTTTATTACTC
ATAGAATTTTATTCAGAAATTCTTCTCACAGTTCTTAAGTTGCTGGAATC
ACATATACAAATCTATACACACACTCCTGTAGATACAAACTGTACAAATA
CAGTGATTACAGACTGACTTGCAGTANACACATCCCCCTTAACTATAGTT
ATTGATGACTGTGGAGAAAGAGAGACTCTTGAACTGTATAGAAGCATCAC
TTTTCAATAAAAAACCTATGGGCAATGAGCTGAAGCAAGGAATAAGAGGG
TGGGAGTTCCAGCAAAAAGGGTGAGGGATTCTGGTAAATAAGCACGCCTG
TGAGATTCCCAAAACTGGAAGAGAATGTCCCCTAACCTTGATAAAAGGGG
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTATTCACTTCCCATGGACAATGAGGTGATGTCATCTCCC
GGCACTCCACCTGGGGTCCTTAGTTTTATATACTGTCCTTGTCACAGACA
GAATGCATTCAGTCATGATATGACTCAGTGACAAGCAATTCAGGTTTTAT
AAAAGATGAAATCTGTCTTTAAAGTGGAGACAATAAATATCGGTTAGCAA
AACGCCTTTTTTATTCGATGACAGAAGCTGCAAAATCCCTCTTAACTAAA
AATATCAAAGAACATTTAGTTTCAAATTCACATTTCAGAATTGAAACATA
CACTGTTTAGGAACCCATGTAGTTTTGTATTTCAACGTAAAGACAATGGA
ACTGGGAAATCGTTTCCAGAAGATATTAACATTTTCCAGATGCACAAGAT
GGGAGAAGGTTGCTATTCCTGGGTCTCACTCCTCAGACGCTGCTGTCTGT
CTTCTTTTCTGAGACGGGTCTCTCATGAGCCTGGTTCTCCCTAAGCAGGC
CTGGCTAGCCATCCCAAGGGCTTGGCCTTTCTCCAAATATGCTACCACAC
CCAGCCCTTTGGACACACATTCTGGGAATTAAACTTGGGTCTTCACGCCT
GGAAAGCAAACACTTTACTGACGGAGCCATGTCTTTTACCATGTTTTATT
AAGTTGTGGTTTGACTACTCTTCCTGCTTCTTCAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_p14.b1 MSMg01no385_p14.b1 CHROMAT_FILE:
MSMg01no385_p14.b1 PHD_FILE: MSMg01no385_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:41 2005
         (551 letters)



>mm_chr11_121700831_121701781
          Length = 951

 Score = 1029 bits (532), Expect = 0.0
 Identities = 543/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgagactacagctgggtctgcttgcacttgtgtgtgcttttattcccatgt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaattcacttgacactacagctgggtctgcttgcacttgtgtgtgcttttattcccatgt 692

                                                                       
Query: 65  gtatttacagtaagtcttggaactgcaatgttgatctctacttctttttcatagattaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtatttacagtaagtcttggaactgcaatgttgatctctacttctttttcatagattaca 632

                                                                       
Query: 125 agttaaggtgggagatacttggaatcacaagctggcctgtagttcagatattcatgtaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agttaaggtgggagatacttggaatcacaagctggcctgtagttcagatattcatgtaca 572

                                                                       
Query: 185 tgatggagggagaaagatccaaaacttgcacaaagatagagggattgtcataaactgtat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgatggagggagaaagatccaaaacttgcacaaagatagagggattgtcataaactgtat 512

                                                                       
Query: 245 agtggcaccccaggactagcacctctcaagtctccagctgaacaaagggaacaattagag 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agtggcgccccaggactagcacctctcaagtctccagctgaacaaagggaacaattagag 452

                                                                       
Query: 305 acactgaggaccaagaatggaatgcatcggtctcttagatgtttaagaactgactttatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acactgaggaccaagaatggaatgcatcggtctcttagatgtttaagaactgactttatt 392

                                                                       
Query: 365 actcatagaattttattcagaaattcttctcacagttcttaagttgctggaatcacatat 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 391 actcatagaattttattcagaaattctcctcacagttcttaagttgctggaatcacatat 332

                                                                       
Query: 425 acaaatctatacacacactcctgtagatacaaactgtacaaatacagtgattacagactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acaaatctatacacacactcctgtagatacaaactgtacaaatacagtgattacagactg 272

                                                                       
Query: 485 acttgcagtanacacatcccccttaactatagttattgatgactgtggagaaagagagac 544
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acttgcagtaaacacatcccccttaactatagttattgatgactgtggagaaagagagac 212

                  
Query: 545 tcttgaa 551
           |||||||
Sbjct: 211 tcttgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_p14.g1 MSMg01no385_p14.g1 CHROMAT_FILE:
MSMg01no385_p14.g1 PHD_FILE: MSMg01no385_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:41 2005
         (588 letters)



>mm_chr11_121515222_121516209
          Length = 988

 Score = 1125 bits (582), Expect = 0.0
 Identities = 585/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   attcacttcccatggacaatgaggtgatgtcatctcccggcactccacctggggtcctta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcacttcccatggacaatgaggtgatgtcatctcccggcactccacctggggtcctta 262

                                                                       
Query: 63  gttttatatactgtccttgtcacagacagaatgcattcagtcatgatatgactcagtgac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttttatatactgtccttgtcacagacagaatgcattcagtcatgatatgactcagtgac 322

                                                                       
Query: 123 aagcaattcaggttttataaaagatgaaatctgtctttaaagtggagacaataaatatcg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcaattcaggttttataaaagatgaaatctgtctttaaagtggagacaataaatatcg 382

                                                                       
Query: 183 gttagcaaaacgccttttttattcgatgacagaagctgcaaaatccctcttaactaaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttagcaaaacgccttttttattcgatgacagaagctgcaaaatccctcttaactaaaaa 442

                                                                       
Query: 243 tatcaaagaacatttagtttcaaattcacatttcagaattgaaacatacactgtttagga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatcaaagaacatttagtttcaaattcacatttcagaattgaaacatacactgtttagga 502

                                                                       
Query: 303 acccatgtagttttgtatttcaacgtaaagacaatggaactgggaaatcgtttccagaag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acccatgtagttttgtatttcaacgtaaagacaatggaactgggaaatcgtttccagaag 562

                                                                       
Query: 363 atattaacattttccagatgcacaagatgggagaaggttgctattcctgggtctcactcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atattaacattttccagatgcacaagatgggagaaggttgctattcctgggtctcactcc 622

                                                                       
Query: 423 tcagacgctgctgtctgtcttcttttctgagacgggtctctcatgagcctggttctccct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagacgctgctgtctgtcttcttttctgagacgggtctctcatgagcctggttctccct 682

                                                                       
Query: 483 aagcaggcctggctagccatcccaagggcttggcctttctccaaatatgctaccacaccc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagcaggcctggctagccatcccaagggcttggcctttctccaaatatgctaccacaccc 742

                                                         
Query: 543 agccctttggacacacattctgggaattaaacttgggtcttcacgc 588
           ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 agccctttggacacatattctgggaattaaacttgggtcttcacgc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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