Query= MSMg01no386_b01.b1 MSMg01no386_b01.b1 CHROMAT_FILE:
MSMg01no386_b01.b1 PHD_FILE: MSMg01no386_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:48 2005
(605 letters)
>mm_chr11_99380499_99381500
Length = 1002
Score = 1137 bits (588), Expect = 0.0
Identities = 598/602 (99%), Gaps = 3/602 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattttcccatctttgctcctaaaggcaacaagtgtaagaaaaccattgggttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttcccatctttgctcctaaaggcaacaagtgtaagaaaaccattgggttt 263
Query: 64 gggctcaggaagtgtgggtctgcattttggctctcacttgtatcacacacacacacttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggctcaggaagtgtgggtctgcattttggctctcacttgtatcacacacacacacttta 323
Query: 124 gtgtaaggtttttttttttctctcattttaccaaggttttctggcctggagcaaggttac 183
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 gtgtaaggtttttttttt--tctcattttatcaaggttttctggcctggagcaaggttac 381
Query: 184 aagacattgaccctacttatctcactagggggcaatcatatgagtccttttgtcatcccg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagacattgaccctacttatctcactagggggcaatcatatgagtccttttgtcatcccg 441
Query: 244 gaggtgccgtgtgcaggttagggctattaatcttaatcacattgaatctgaaggtctttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaggtgccgtgtgcaggttagggctattaatcttaatcacattgaatctgaaggtctttt 501
Query: 304 ctgggttacttttgataggctatggagtgggaggcttggtgcatgtggggacagtctccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgggttacttttgataggctatggagtgggaggcttggtgcatgtggggacagtctccc 561
Query: 364 tgggaatatttaaatcagactcagatgaagtctatcaccagtgacagtgctgggcaggct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgggaatatttaaatcagactcagatgaagtctatcaccagtgacagtgctgggcaggct 621
Query: 424 tacttggctctcaagtcatctgcagccagtttggtgttgtcaatttgtgagaccagtctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacttggctctcaagtcatctgcagccagtttggtgttgtcaatttgtgagaccagtctg 681
Query: 484 gaattttcagccttggtacacaagatctagaattaagagattgcacacacaaatgagaca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattttcagccttggtacacaagatctagaattaagagattgcacacacaaatgagaca 741
Query: 544 aacaccaggatcccgtactttaagaaccaaaggaccgtgtgttcttagttagcagaagac 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 742 aacaccaggatcccgtactttaagaaccaaaggaccgtgtgttct-agttagcagaagac 800
Query: 604 tg 605
||
Sbjct: 801 tg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1002
Length adjustment: 10
Effective length of query: 595
Effective length of database: 992
Effective search space: 590240
Effective search space used: 590240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_b01.g1 MSMg01no386_b01.g1 CHROMAT_FILE:
MSMg01no386_b01.g1 PHD_FILE: MSMg01no386_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:48 2005
(641 letters)
>mm_chr11_99547096_99548136
Length = 1041
Score = 1224 bits (633), Expect = 0.0
Identities = 639/641 (99%)
Strand = Plus / Minus
Query: 1 caaaggaatgtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caaaggaatgtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacc 782
Query: 61 tgagattctctaatacatttgcctgctctttctttcagtagctgcacattagaaacaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgagattctctaatacatttgcctgctctttctttcagtagctgcacattagaaacaaca 722
Query: 121 ctctagcatcgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctctagcatcgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggc 662
Query: 181 aagtggggacaatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagtggggacaatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacc 602
Query: 241 cagaagaactataagatatgtggcacaaatccaggaagaatcatccagtttataatcctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaagaactagaagatatgtggcacaaatccaggaagaatcatccagtttataatcctg 542
Query: 301 gaagaaggaaacactctagatacatttcctccacagactgtccagagacgagagggagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagaaggaaacactctagatacatttcctccacagactgtccagagacgagagggagtt 482
Query: 361 tgttggggattttattcaccccacttcacttagcagaatgataattgggtctaagagcag 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttggggattttattccccccacttcacttagcagaatgataattgggtctaagagcag 422
Query: 421 attaggtgccattctcacaggtaaggagatgaactaagggagtttttcgctctagctcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaggtgccattctcacaggtaaggagatgaactaagggagtttttcgctctagctcat 362
Query: 481 catgatggttggaattgtttgggatgatttccagtaacaaacaagtttgacatgtattct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgatggttggaattgtttgggatgatttccagtaacaaacaagtttgacatgtattct 302
Query: 541 gtttcaatatattcttctcataaccacaatcccagcgaagctacccagttcagcattggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtttcaatatattcttctcataaccacaatcccagcgaagctacccagttcagcattggc 242
Query: 601 attacccacagccgtcctggacagggctagttcctataggt 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attacccacagccgtcctggacagggctagttcctataggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
