BAC Information

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BAC

Clone NameMSMg01-386E11
Chromosome11 (Build37)
Map Location 68,403,356 - 68,403,848
singlet/doubletsinglet
Overlap genenone
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997
Downstream geneCcdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386E11.T7 (MSMg01no386_e11.b1)MSMg01-386E11.TJ (MSMg01no386_e11.g1)
ACCAG489283AG489284
length714721
length of high quality
(start - end)
590 (65 - 654)493 (76 - 568)
definitionCHROMAT_FILE: MSMg01no386_e11.b1 PHD_FILE: MSMg01no386_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:03 2005CHROMAT_FILE: MSMg01no386_e11.g1 PHD_FILE: MSMg01no386_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCACAATTTTCGTTCTATTGTGGTCTTGGGGGAGGGTCTTTATTTCAC
TTAGAATAAGCTGTAAAGTTCATTTATGTTATATCTTGTTCCTGGCATTT
ATTTATTTACTGGTTTTTTTTGTTTGTTTGTTTGTTTTTTTTTTGTTTTT
TTGAGACAGTGTTTCTCTGTGTAACAGTCCTGGCTGTCCTGAGACTCAAC
TCTATAGACCAGGTTGGCCTCAAACTTACAGACAGCCCCCTGCCTCTGCC
TCCCAAGTGCTAGGATGTACCATCACTGCCTGGGTCTTGATTTTATTTTT
TGAAAATTTGTTTTTATTTATTATTATTTTTCATTTTATATATATGAATA
TTTAATATGTGTACTATGCCTGGTGCCCACAGAAGCCAGAGACAATCAGA
TGCTCTGCCACTGGTGTTACAGACAGTGGTAAGCTGCCACATGGGTGCTG
GGAATTGAACCTGCATCCTCTGGAAGGGCAATCAGTGCTCTTAACCACTA
AGTCATCTCTCCAGCCTGTTGATTGAAGCTGGTCTATTCTAGACCAGCAT
CCTATCAATCATGCTACGTGTCTTCTTGTGAGATTGTTTCAGGGCTTTTC
AGGTATCTTATTTGTGGTTAAGGGAGTCCCAGTGTTCCTTTCCTAAGAGG
TTTTTATTGTTTCC
AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATGGTCTCCTGATTTGGTACATAG
TGCTTCTGTTTCTCCAGCTGTCCGCTGAAAGGTGGTAGCCCTCTCTTCCT
ACAAAGTCCATGACAGTAGTAATGGAACCATATGTTAAATGCTTCTGACA
GTCCAGACTGGCATCAACCAGGGCTAGAGGAGATGACAGTGGTAACTGAA
TTCTGCACGCAGGAGGGATGAGGCTCAGCTACTGACCCTGCCTCTTCTTT
TTGCAGCATCAGGACCATTGCAAGTCAACCCCTTGCACTTGACCAGGTGT
CACCAGGTGTCTCTTTTCTCCTGTCATGGGCCCCCATGATTCCTCATGGA
TGAACAAGGATAGTGGCGACATTTAGGGGGGATGGAGAGACGCACCAGAT
ATGTGCCCTGCTCCAAAGCACCAGAGAGGCCCGGGGGATCCCAAATCAGT
CATATATGAATCACCTAGAAAGTTTTTAAACACCTATAGGTGTCTGGTCT
CAACCTGAGACCTGCTAGAGGCATAAGAAGGAAGAAGTTACCAGCGCCTG
TATTTGTGAAGAGTACCATGAGATTCCACAGCTTCTGACTTCCTGGAAGT
CATTTGGAGAGTCCTTCACTCTCAGACTTCCTGTCCTCTTCAATACTCCA
TCAACTTTGCTCTGGTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_e11.g1 MSMg01no386_e11.g1 CHROMAT_FILE:
MSMg01no386_e11.g1 PHD_FILE: MSMg01no386_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:03 2005
         (493 letters)



>mm_chr11_68403156_68404048
          Length = 893

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtctcctgatttggtacatagtgcttctgtttctccagctgtccgctgaaaggtgg 60
           |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 693 catggtctcctgatttggtacatagtacctctgtttctccagctgttcgctgaaaggtgg 634

                                                                       
Query: 61  tagccctctcttcctacaaagtccatgacagtagtaatggaaccatatgttaaatgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tagccctctcttcctacaaagtccatgacagtagtaatggaaccatatgttaaatgcttc 574

                                                                       
Query: 121 tgacagtccagactggcatcaaccagggctagaggagatgacagtggtaactgaattctg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgacagtccagactggcatcgaccagggctagaggagatgacagtggtaactgaattctg 514

                                                                       
Query: 181 cacgcaggagggatgaggctcagctactgaccctgcctcttctttttgcagcatcaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 513 cacgcaggagggatgaggctcagctactgaccctgcctcttctttctgcagcatcaggac 454

                                                                       
Query: 241 cattgcaagtcaaccccttgcacttgaccaggtgtcaccaggtgtctcttttctcctgtc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagtgcaagtcaaccccttgcacttgaccaggtgtcaccaggtgtctcttttctcctgtc 394

                                                                       
Query: 301 atgggcccccatgattcctcatggatgaacaaggatagtggcgacatttaggggggatgg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 393 atgggcccccatgattcctcatggatgaacaaggatagtggggacatttaggggggatgg 334

                                                                       
Query: 361 agagacgcaccagatatgtgccctgctccaaagcaccagagaggcccgggggatcccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 333 agagacgcaccagatatgtgccctgctccaaagcaccagagaggcccggggaatcccaaa 274

                                                                       
Query: 421 tcagtcatatatgaatcacctagaaagtttttaaacacctataggtgtctggtctcaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcagtcatatatgaatcacctagaaagtttttaaacacctataggtgtctggtctcaacc 214

                        
Query: 481 tgagacctgctag 493
           |||||||||||||
Sbjct: 213 tgagacctgctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)