BAC Information

Click to search

BAC

Clone NameMSMg01-386I14
Chromosome11 (Build37)
Map Location 111,577,116 - 111,577,784
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
Downstream geneLOC629967, LOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386I14.T7 (MSMg01no386_i14.b1)MSMg01-386I14.TJ (MSMg01no386_i14.g1)
ACCAG489481AG489482
length788747
length of high quality
(start - end)
247 (74 - 320)659 (68 - 726)
definitionCHROMAT_FILE: MSMg01no386_i14.b1 PHD_FILE: MSMg01no386_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:22 2005CHROMAT_FILE: MSMg01no386_i14.g1 PHD_FILE: MSMg01no386_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAGATCCGCGG
AATTCCATACTGATATCAATAGTGCTTTGATTATGTTCCTCTTCCTATCT
TTCCAGATTCATTTCAACTCCCACAATTCTCACAACCTCATGCCCCTCCC
CCTTTTTTAAATGTAATTCACAGAATCTAATGTGCTGCCTATATAGTCAT
GGCTGTGAGCCAACTAACTGGAGCATGGTCAATGTATCAACAGCTGCACA
CTTTAAGAAACCTGACCTTGCTCCCCCCAAAAGCCATCAACTGTCATTTG
TTAGAGGTGGGAGCCCATGATCTTTTTTTCCTACTACATGGTAGAGTATT
GACTAGGTTGATCATGTGCAGGTCCTGCACAGACAACCACAGTGGCTTTG
AATTCATAAATGCAGATATTTCTTTCTCATAAAGGCATAGAGCCTACCGA
GAGATGCCCAGTGTCTTGCCATGCTAGACTTTATAACCAGCTGTGAACAC
AACTGCAGCAACAAAGGGATGCTCACGTTATCGCCTGCCACTCTCTACCC
TCCGCCATCTTGCCACCACCATCACTAGCTCCCCTGCAGTGACCATCCCC
CCCCGTGCCCCCCCCCTGCTCCGGACCCGTGCCCCCATCTTTCACCCCCA
CTATCCCCACTTACCTCCACCTTCTATCACCCCCACCCCAACCCCTCCTC
GTCCCAATCCACCCCTCCACCAAATTCACACGCTCTCCAGCCTCCCCCAC
CTCCCCCCCGCTCCATTCGCCCCCCATCACCTCTCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATAACCACGCACATGCTTAAAATCATTCTGTT
GGTTCCCCTTAAGTTATTATCTCATACACACACCAGATGATGTCTGCAAA
GCGTATTGTCAACACCTTGTCCTCTCTCTGCTCACCTTTCATTTGTTGCC
ATCCTTTTATGATTCTATTCTGGCTTTAGAGCACCTACAGTAACTACTTC
TCAATTCCACTTCTGTCTCCCTATGTCTTCCTATGCTTTCCAGTGATTTT
GTATTCCTCATGCTCTTTAGATATTCTGACTCTTAGGAGTCATCACCCCT
GAAGGAGAGGTCTCTGATTGCCTTCAGCTGGCCACACATAATTATTTTTA
ATACATCATCTCATTTTGTTCATCTGCTAGTAATTGGTACCCTGAGCCCA
TGTCGTTACTTTTCCCTCTCCTTCATTCATTCAGCTTTCTGTAACTCCCA
AAAATTTCTAATTGTTTAGAAAAAATTGACTTGTCAATAGTCAAATTATT
CATAAATATCTATATATTCTTTCAAAGAGGGTGTAGGATACTCATTAAAG
AAATAAGTTTATGAATTAATAGTTTGAGATTCCCCTATGAAAATGAAAGC
AAACTTACTTCTAAAGGACATATGCACAACTTCCTATGACACATACGTGT
ATGTCTGTGTATCTGTTATAGCTAATATCAAATTCATTCTTAAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_i14.g1 MSMg01no386_i14.g1 CHROMAT_FILE:
MSMg01no386_i14.g1 PHD_FILE: MSMg01no386_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:22 2005
         (659 letters)



>mm_chr11_111576956_111578015
          Length = 1060

 Score = 1205 bits (623), Expect = 0.0
 Identities = 654/669 (97%), Gaps = 10/669 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaccacgcacatgcttaaaatcattctgttggttccccttaagttattatctcatac 60
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 829 aataaccacgcacatgcttaaaaccattctgttggttccccttacgttattatctcatac 770

                                                                       
Query: 61  acacaccagatgatgtctgcaaagcgtattgtcaacaccttgtcctctctctgctcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 acacaccagatgatgtctgcaaagcgtattgtcaacaccttgtcctctctctgctcacct 710

                                                                       
Query: 121 ttcatttgttgccatccttttatgattctattctggctttagagcacctacagtaactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttcatttgttgccatccttttatgattctattctggctttagagcacctacagtaactac 650

                                                                       
Query: 181 ttctcaattccacttctgtctccctatgtcttcctatgctttccagtgattttgtattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttctcaattccacttctgtctccctatgtcttcctatgctttccagtgattttgtattcc 590

                                                                       
Query: 241 tcatgctctttagatattctgactcttaggagtcatcacccctgaaggagaggtctctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcatgctctttagatattctgactcttaggagtcatcacccctgaaggagaggtctctga 530

                                                                       
Query: 301 ttgccttcagctggccacacataatta-tttttaatacatcatctcattttgttcatctg 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 ttgccttcagctggccacacataattattttttaatacatcatctcattttgttcatctg 470

                                                                       
Query: 360 ctagtaattggtaccctgagcccatgtcgttacttttccctctccttcattcattcagct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctagtaattggtaccctgagcccatgtcgttacttttccctctccttcattcattcagct 410

                                                                       
Query: 420 ttctgtaactcccaaaaatttctaattgtttagaaaaaattgacttgtcaatagtcaaat 479
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttctgtaactccccaaaatttctaattgtttagaaaaaattgacttgtcaatagtcaaat 350

                                                                       
Query: 480 tattcataaatatctatatattctttcaaagagggtgtaggatactcattaaagaaataa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tattcataaatatctatatattctttcaaagagggtgtaggatactcattaaagaaataa 290

                                                                       
Query: 540 gtttatgaattaatagtttgagattcccctatgaaaatgaaagcaaacttacttctaaag 599
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtttatgagttaatagtttgagattcccctatgaaaatgaaagcaaacttacttctaaag 230

                                                                       
Query: 600 gacatatgcacaacttcctatgacacat-----ac----gtgtatgtctgtgtatctgtt 650
           ||||||||||||||||||||||||||||     ||    |||||||||||||||||||||
Sbjct: 229 gacatatgcacaacttcctatgacacatatgacacatatgtgtatgtctgtgtatctgtt 170

                    
Query: 651 atagctaat 659
           |||| ||||
Sbjct: 169 atagttaat 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space:   681450
Effective search space used:   681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)