BAC Information

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BAC

Clone NameMSMg01-386N07
Chromosome11 (Build37)
Map Location 120,197,527 - 120,197,767
singlet/doubletsinglet
Overlap genenone
Upstream geneCard14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1
Downstream geneActg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386N07.T7 (MSMg01no386_n07.b1)MSMg01-386N07.TJ (MSMg01no386_n07.g1)
ACCAG489707AG489708
length720733
length of high quality
(start - end)
244 (63 - 306)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no386_n07.b1 PHD_FILE: MSMg01no386_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:43 2005CHROMAT_FILE: MSMg01no386_n07.g1 PHD_FILE: MSMg01no386_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTAAATCGTGAGGTCGGCGGAATTCGACAGT
TTACGGAAAATCTGGCTGCATCAGGAAATGCACTCAGCTCCCTGCTGAAA
GGGAAGGCTGACCTCACTGAAGGGGACATAACCTCAGAAGCTGAAAATTA
CTGGAATTCATAACAGCAAAGGAAGCCACAGAGATGTTGACTCTAGCAGG
AAAATTATCCACAAGTTTGGCCCATACTGCATCCACTACACCTGCACTCA
GAACTTCCAGGCAGAGCCCGGGGATGAAGTAACAAGAGGAGAGGGAGGGA
GGGTTTGCTTGTCTTATGCTGCAGGGCTACACACAAGGGAACATTGGTAT
GTGTGCAGATACACAGGGTGAACACACACAGGTACATTAGCTCTCCTGCT
TCTGTCACCTGGGAGGGCCCGGCATCCATCCAGGACAACCAAGACCTTTG
TGGGGGAGACTTGTCTGAGCCATGGTATCCAAGCACCAGAGAGTTCTGAA
CCTTCCATGCCCTGGGAGCCCCAGGACCCTCCACACCACTCATCCATCCT
CCATGGGACATAGAGGCTCTGACCTCTCTTTGTGTTGGTCCTGTTGCCCA
AGTTCTGATATGTCCCTGTGCTGGGTTTCTGGGTCCTATACAGTTATATT
AGGTATTTCCAGACAGGCCTGGAGAGTAATCATCAGGCAGGGTTTTCCCG
CACAGCCTTCAACGTGTCTC
AATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTGCTGACCGGAGGTGAACT
ATAGAAGGTTACGAAAAATTCCAACACCACATAACTGCAGAAACTGTCTG
CAGCTGACAAAATCACACCCCTGCTAGAGCACGAGGCAAATCACAGGCAG
CTGCTGCGAGGCAGCCCCATCCTCGCACCTGAGATTAAAACAAAAACACG
TTCTTTTTTTTTTTTTTAAGATTTATTTATTATATATAAGTACACTGTAG
CTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTTATTACAGATGGTT
GTGAGCCACCTTATGTTGGTGGTTATTTGAACTCAGGACTTCTGGAAGAG
CAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCAGCCCCCCAAAAACAC
ATTCTTACAATATCCCCGCGGGTTTTTTTTTAAAGGAACCAAAATGCCAA
AATGGACACTTACAGCATGTAGACTTTGATGTTTTAAACCTACTTTTAAT
AAGCATGCTTTGACCTCAATTCTAGCCCACCATCCAAAGGCAGGGGAGAA
AAGATAGGACAAGGTGTTGTGGAGCTGTTTAAAAGCAGTTCCTTATGGCG
ACTCCATCTCTGTTTGTCAGGATATCATCAGTCCAGTTCAGTAGCATCAG
GATATCTTACTTGATTCACCGGTAGGGGCATGATCTAGTATATACCAACA
GTCCTCCGCTTGTTGATACGTCCTTATCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_n07.b1 MSMg01no386_n07.b1 CHROMAT_FILE:
MSMg01no386_n07.b1 PHD_FILE: MSMg01no386_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:43 2005
         (244 letters)



>mm_chr11_120197327_120197970
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctgcatcaggaaatgcactcagctccctgctgaaagggaaggctgacctcactgaag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tggctgcatcaggaaatgcactcagctccctgctgaaagggagggctgacctcactgaag 260

                                                                       
Query: 61  gggacataacctcagaagctgaaaattactggaattcataacagcaaaggaagccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacataacctcagaagctgaaaattactggaattcataacagcaaaggaagccacaga 320

                                                                       
Query: 121 gatgttgactctagcaggaaaattatccacaagtttggcccatactgcatccactacacc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgttgactctagcagtaaaattatccacaagtttggcccatactgcatccactacacc 380

                                                                       
Query: 181 tgcactcagaacttccaggcagagcccggggatgaagtaacaagaggagagggagggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tgcactcagaacttccaggcagagcccggggatgaagtaacaagaggggagggagggagg 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)