BAC Information

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BAC

Clone NameMSMg01-387B02
Chromosome11 (Build37)
Map Location 30,368,077 - 30,368,392
singlet/doubletsinglet
Overlap gene4930505A04Rik
Upstream geneA430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432
Downstream geneAcyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387B02.T7 (MSMg01no387_b02.b1)MSMg01-387B02.TJ (MSMg01no387_b02.g1)
ACCAG489889AG489890
length778728
length of high quality
(start - end)
514 (43 - 556)456 (87 - 542)
definitionCHROMAT_FILE: MSMg01no387_b02.b1 PHD_FILE: MSMg01no387_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:01 2005CHROMAT_FILE: MSMg01no387_b02.g1 PHD_FILE: MSMg01no387_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGCTAGATTCTCATGAAAGCCAGAAGATCCTGGGAAGATGTCATATA
ACCCATAAGAGAACACAAATGCCAGCCCAGTCTACTGTACCCAGTGAAAC
TCTCAATTACCATAGATGGAGAAACCAAGATATTCCATGACAAAAACAAA
TTTACACAATGTCTCTCCACAAATCCAGCCCTTTGAAGGATAATAAATGG
AAAACTCCAATGCAAGGAGGGAAACTACACCCTAGAAAAAGCAAGAAAAT
AATCTTTTAACAAACCAAAAAGAAAAGAGCCACAAAAATGTAATTCTACC
TCTGACAACAAAAATAACAGGAAGCAGCAATCATTTTTCTTTAATATCTT
TTAATATCAATGGACCCAAATCCCCAATAAAAAGACATAGACTAACAGCC
TGGATACATAAACAGGACCGAATATTTTGCTGCATACAGAAAACGTTCCT
CAGTGACAAAGACAGACACTACCTCAGAGTAAAAAGCTGGAAAACAATTC
TCCAAGCAAATGGACCCGAGAAATAATCTGGAGCACCTATTCTACAATTG
AATGAAATCAACTTTCCACCTAAAGTTATCCAATTAGATTAGAAGGACAC
TTTCTTACTCTTCAAAGGATAATCCTATCAGGAAGGAACTCTCCAATTTC
CTAACATCTACTACTCCCCAATGGGCGGGGTACCCCCCTTTCTATTATAA
AAACCCTTTACTAAAAGTCCCCCGCGAA
CCCCCCCTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTGAAGCCAC
TCACGTTTAAACTAACACACTCTTGTAACATATATACCCCTGAACCCATG
GGCATACGTTAACAAGACAGTCATTATGTTAACTCATAGAATTTGCAATG
AGGCCAGGAGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAG
AGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTT
CCAGGACAGCCAGGGCGATACAGAGAAACCCTGTCTCGAAAACAAACAAA
CAAACAACAACAAAAAAGAAATTTCAATGAGTAATACTCATGATTACTGT
CAGGGGATAACCAAGTAAAAACAATAACCCATGATGCTTGAAGGTCTATG
AAATCCCACTGGCCACAAATAAAAAAATGTTTTAAAGATAATTCATTATT
GGTGCTGAAATTTTCTTTGGTAGCTTGTGCCTAGTTTGTGTATTTCTCTA
CCATTATCAGGCAAATTCACTTAAATTTTTACTAGATTTTGTATATGCCT
ATACTTTCTGGACGCTTCCACAACGGTAGTGGGTCGGCCAGATCTGCCCA
CTTGTCTCATATATATCCTTGTATGACCACTCCTCCTCACTCGAGCAAAT
GTTTTTTTTTACTGCTTCGCATGGACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_b02.g1 MSMg01no387_b02.g1 CHROMAT_FILE:
MSMg01no387_b02.g1 PHD_FILE: MSMg01no387_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:01 2005
         (456 letters)



>mm_chr11_30368077_30368932
          Length = 856

 Score =  487 bits (252), Expect = e-142
 Identities = 297/316 (93%), Gaps = 10/316 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actattgaagccactcacgtttaaactaacacactcttgtaacatatatacccctgaacc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 actattgaagctactcacgtttaaactaacacactcttgtaacatatatacccctgaacc 257

                                                                       
Query: 61  catgggcatacgttaacaagacagtcattatgttaactcatagaatttgcaatgaggcca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 256 catgggcataccttaacaagacagtcattatgttaactcatagaatttgcaatgaggccg 197

                                                                       
Query: 121 ggaggtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttct 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 ggaggtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggtggatttct 137

                                                                       
Query: 181 gagttcaaggccagcctggtctacaaagtgagttccaggacagccagggcgatacagaga 240
           ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 136 gagttcaaggccagcctggtctacaaagtaagttccaggacagccagggctatacagaga 77

                                                                       
Query: 241 aaccctgtctcgaaaacaaacaa------acaaa-caacaacaa-a--aaagaaatttca 290
           | |||||||||||||||||||||      ||||| ||||||||| |  ||||||||| ||
Sbjct: 76  agccctgtctcgaaaacaaacaaccaacaacaaaacaacaacaacatcaaagaaattgca 17

                           
Query: 291 atgagtaatactcatg 306
           ||||||||||||||||
Sbjct: 16  atgagtaatactcatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)