BAC Information

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BAC

Clone NameMSMg01-387H14
Chromosome11 (Build37)
Map Location 120,781,976 - 120,782,360
singlet/doubletsinglet
Overlap geneCcdc57
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneSlc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387H14.T7 (MSMg01no387_h14.b1)MSMg01-387H14.TJ (MSMg01no387_h14.g1)
ACCAG490198AG490199
length1,036800
length of high quality
(start - end)		---388 (82 - 469)
definitionCHROMAT_FILE: MSMg01no387_h14.b1 PHD_FILE: MSMg01no387_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:32 2005CHROMAT_FILE: MSMg01no387_h14.g1 PHD_FILE: MSMg01no387_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTTTGCTGGACGCNTAATAACGACCCACCTCATAGGTCAGCACAAAC
TCCTGCCGGACATTCCACGGCCTCAGCTCNGCCACTCACACTACGAGTAG
AATCGTCGCTCTTCGGCAAACGCGATTTTCGCTTTTCGTCGTAATCGTCT
TCCCATGACACTCACACCTGTACTCCTTTTCTACCTAGCGTTCCATCTGT
ACCTCCCTCGGCACGTTCTAGAAGTGTGCAGTGCGCCTACCCACTCTGCA
CCACACTACCAGTCTCGGGTACTTTCTTCTACCTTCTGGCACTCACTGTA
ACTACTCGTGCTATCATATCGTTCTTCAGCGGCCCTACACCTCCTCTTAT
ATACTCCCTCCCAACTAAACTCCGCTCTTACTGCCCTCTTCCCTTTCCTC
CCCCTTCTCAGCTCTTCTCTTTATTTTCGCTCCGCTCCCCTCCTTATTTA
CTCTCTATTACACTACCCCGTCACTACTGCTCCTCTGCCCCTTCCACACC
GCCTCTATTAACTACCACCACCCTTATTCCTCTTCCCCCCCATTGTTCCT
GCGTCTTTCGTTTACTGATATTCTTACCCTCTTCTCCTCTCTCCCCCTCG
TACTCTCCTGTCACAGTCACAACTTCTCCCTGACTCCTTTACTTTTAACT
CTTACCCCCTTCTTCCCATCATCCCCACCTCCCTTTCTCTTCTTTTATTC
CTCCACTCGCCCTTCCTCTACTTCCTCTCTCAATTTTCATCTCCTTCTCC
CTTTGGCAACCTACTTCTCCCACCATATCCCTATCTCCACTTCTCTCCCA
AACTACCTCCCCTTTATTTCCCCCTTTTGTCTATACTTATCTCCATTCTT
CACCTCATTTACTTCCAATGTCCCTGCTCTCCTCTTTATTCCTTCTACTT
ATCTCACTCTTGTCATATAGCGCCGTTCCTTACATCTTCTATACTCTCCC
TTATTTCTGTCCCCTTCCTTTCTCCCCCCTCCATCCCCTTCACACTCCGT
TTACACATCTTGTCTCTCCTCTCCTTTGTCCTCCTT

NNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCTGGGCTACA
CAGAAAAACTCTGTTTCAAACAAACAAATGGAGCCCTGAGGATTTGGGGT
AGTTACAAGTGGCGACTGACAAAGCGTCCGAGTGACCGGAAGGTCTCAGA
TTTGGAGAAAAAGGAAAGAGTCACAAAATCACACAAAGCAGCTTCAGCTT
CCAAGTGCGAGCTACATGAGTCTGTGCTGAGGATGCTCCAGACGGTGGCT
GAGCAGCACTTCCCGACTGGGTCACAGGTGCTGCAGAACATTTACTAAAG
ACCTCCACGACTAGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGG
AGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCCAGCCTGGTCTACAGA
GTGAGTTCCAGGACAGTCCGGGCTACTCAGAGAAACCCTGTCTCCTAACA
AACCCACAACCCCCTCAATAAATAAATAAGAACTTCCTGGCTGACACTAC
ATCTCTGGATGGTAAGGTGAAACTCCGGAACGGCTGCTCATCATCTTTTT
CACCCCCCCTTCTTTTCCCCCTTCCCTTGCTTTGATTTCCCCTTTGACAT
CCCCCGCCCCCCCTTTTTTCTCTTTTCCCTTTTTTTCCCCCCCTCTCTGT
CCGCTTCTAAAGTCGCCTCCCCGACTTTTTTCTCCTCTTCCTTCCTTCCT
TCTCTCTTTCTCCTCTCTGTTCTTTCTCCCTTTTTTCTCTCTCCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_h14.g1 MSMg01no387_h14.g1 CHROMAT_FILE:
MSMg01no387_h14.g1 PHD_FILE: MSMg01no387_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:32 2005
         (388 letters)



>mm_chr11_120781776_120782563
          Length = 788

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagcctgggctacacagaaaaactctgtttcaaacaaacaaatggagccctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagcctgggctacacagaaaaactctgtttcaaacaaacaaatggagccctgagg 260

                                                                       
Query: 61  atttggggtagttacaagtggcgactgacaaagcgtccgagtgaccggaaggtctcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttggggtagttacaagtggcgactgacaaagcgtccgagtgaccggaaggtctcagat 320

                                                                       
Query: 121 ttggagaaaaaggaaagagtcacaaaatcacacaaagcagcttcagcttccaagtgcgag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttggagaaaaaggaaagagtcacaaaatcacataaagcagcttcagcttccaagtgcgag 380

                                                                       
Query: 181 ctacatgagtctgtgctgaggatgctccagacggtggctgagcagcacttcccgactggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacatgagtctgtgctgaggatgctccagacggtggctgagcagcacttcccgactggg 440

                                                                       
Query: 241 tcacaggtgctgcagaacatttactaaagacctccacgactaggtgtggtggcgcacgcc 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tcacaggtgctgcagaacatttactaaagacctccacgactgggtgtggtggcgcacgcc 500

                                                                       
Query: 301 tttaatcccagcactcgggaggcagaggcaggctgatttctgagtttgaggcccagcctg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcccagcactcaggaggcagaggcaggctgatttctgagtttgaggcccagcctg 560

                                    
Query: 361 gtctacagagtgagttccaggacag 385
           |||||||||||||||||||||||||
Sbjct: 561 gtctacagagtgagttccaggacag 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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