BAC Information

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BAC

Clone NameMSMg01-387K16
Chromosome11 (Build37)
Map Location 39,419,519 - 39,566,463
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387K16.T7 (MSMg01no387_k16.b1)MSMg01-387K16.TJ (MSMg01no387_k16.g1)
ACCAG490346AG490347
length767789
length of high quality
(start - end)		461 (46 - 506)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no387_k16.b1 PHD_FILE: MSMg01no387_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:47 2005CHROMAT_FILE: MSMg01no387_k16.g1 PHD_FILE: MSMg01no387_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,566,007 - 39,566,463)(39,419,519 - 39,419,756)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAATATCTACTTTCCACCTTTATAGTATTGGGAAGCAGCTGCTT
TTGTGCAATTGCTTCCATAGAGTGGTTTTGGAATGAGCAGTAAGATACAG
ACACTAGGTTCTATCCTTGAAAGTGAAAACAGGTTCTTTGACTTGTCCCA
CTCAGTTCTGCCAAGCTCTTCAACTAGCTTTCTAAAAATTTGCTCCAAAC
TAAAGTTAACACACTGAACAAAAATAACTGATTGGCATTCCTGACCAACA
ACATATACATATTCAAGTCATGGGAAGTCAAAATAAGATATAGAACAATT
GACAGTCCTTGCAAACCAAATGTCTGCAACATATCATCTAGAAATTGCGA
TCCAGACTAACCCTAGAAAAAAAAGGAGTTTTATTTCAATTGCAAACGTT
ATTTTGCACACGTCTCAAGCAGAGAATATTATTTCTTAGAGCTTTGCTAG
GCTCTTCAGGCCACTATACAAAATGTAATAGAATGACCCAAGTGGGAGTG
CGGGATGCAGCTAACTTAACTTTGCCTGTTTAATTGCTGGCAGGGAGACC
CCTTCCTCCCATTACGGGTTATCAACCATACCGGACGCCTCCCTCGGACA
AGGGGACCTCATGCCCTCCTAGTCGTTGGAGTATCCCTACATCCCTCCGT
CTCCCATTTAATCCCCTCAATCCCCCCTTCCCGTCTCATCCTACCAATTT
TTCCGCCCCTTCCGCGT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCGTATCCTTAACAGCTG
TGGCATCTGGACAATGTACCTAACATCTCTGAGTCTTTATTGTTGTTTAG
AAGATAGGGAATTAATAAGACTGTCAGTGAGAACATATTTTAGGCACACT
GCATTGATGAATCACTGCCTTAGTTTCACCTCTCTGACCAATAACCTGAC
AATAACAAAGATTAGTAGAAGAGAGTTTTTAGTTTGTGTTGTTTGTTTTG
TTTGTTTGTTTGTTTGNTTGNTTTTTTTTTNNNNNNNNNNNNNNTNTTNN
TTTTTTNTTTTTTTTTTTTTTTTTTTNNTTNTNTTGGTGGGGGGGGTGTN
TTTGNGTTTTNNGTTTTTGTTNNNNNTGGGTTTGTTTTTTGTGTTTTGTT
GGGNTTTTTTGTGTTTTTGGTTTTGTGTTTGGTTTTTTTTGTGTTTGTTT
TTGTGTGTGTTTTTGTTTGTTGGTTTTTGTTGGTGTGTTTTTTTTGTTGT
TTGTTTTTTTTTGTGGTTTTGGTTGTTTTGTTTTTTTGTTGGTTTTTTTT
TTTGTTTGGTTNTTTTTTTTNTTTGTTTTTTTGTGGTGGTTNGTTTTGTG
GTGTTTTGTTGTTTTTTTTTTTNNGGTTTTTGTGGTTTTTGGGTGGTTGT
NGTTTTTTTGTTGTTTTTGGTNGGTTGTTTTTTTTGTGTTGTNTTNGTGT
TTTTTTGTTTTTTTGTTTTTGTTTTTTTGTTTGGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_k16.b1 MSMg01no387_k16.b1 CHROMAT_FILE:
MSMg01no387_k16.b1 PHD_FILE: MSMg01no387_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:47 2005
         (461 letters)



>mm_chr11_39565803_39566663
          Length = 861

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatatctactttccacctttatagtattgggaagcagctgcttttgtgcaat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattcataatatcaactttccacctttatagtattgggaagcagctgcttttgtgcaat 602

                                                                       
Query: 65  tgcttccatagagtggttttggaatgagcagtaagatacagacactaggttctatccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgcttccatagagtggttttggaatgagcagtaagatacagacactaggttctatccttg 542

                                                                       
Query: 125 aaagtgaaaacaggttctttgacttgtcccactcagttctgccaagctcttcaactagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagtgaaaacaggttctttgacttgtcccactcagttctgccaagctcttcaactagct 482

                                                                       
Query: 185 ttctaaaaatttgctccaaactaaagttaacacactgaacaaaaataactgattggcatt 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttctaaaaatttgctccaagctaaagttaacacactgaacaaaaataactgattggcatt 422

                                                                       
Query: 245 cctgaccaacaacatatacatattcaagtcatgggaagtcaaaataagatatagaacaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctgaccaacaacatatacatattcaagtcatgggaagtcaaaataagatatagaacaat 362

                                                                       
Query: 305 tgacagtccttgcaaaccaaatgtctgcaacatatcatctagaaattgcgatccagacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgacagtccttgcaaaccaaatgtctgcaacatatcatctagaaattgcgatccagacta 302

                                                                       
Query: 365 accctagaaaaaaaaggagttttatttcaattgcaaacgttattttgcacacgtctcaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accctagaaaaaaaaggagttttatttcaattgcaaacgttattttgcacacgtctcaag 242

                                                
Query: 425 cagagaatattatttcttagagctttgctaggctctt 461
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagagaatattatttcttagagctttgctaggctctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_k16.g1 MSMg01no387_k16.g1 CHROMAT_FILE:
MSMg01no387_k16.g1 PHD_FILE: MSMg01no387_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:47 2005
         (241 letters)



>mm_chr11_39419319_39419959
          Length = 641

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctcgtatccttaacagctgtggcatctggacaatgtacctaacatctctgagtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctcgtatccttaacagctgtggcatctggacaatgtacctaacatctctgagtcttt 260

                                                                       
Query: 61  attgttgtttagaagatagggaattaataagactgtcagtgagaacatattttaggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttgtttagaagatagggaattaataagactgtcagtgagaacatattttaggcaca 320

                                                                       
Query: 121 ctgcattgatgaatcactgccttagtttcacctctctgaccaataacctgacaataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcattgatgaatcactgccttagtttcacctctctgaccaataacctgacaataacaa 380

                                                                     
Query: 181 agattagtagaagagagtttttagtttgtgttgtttgttttgtttgtttgtttgtttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattagtagaagagagtttttagtttgtgttgtttgttttgtttgtttgtttgtttg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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