BAC Information

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BAC

Clone NameMSMg01-388O06
Chromosome11 (Build37)
Map Location 98,500,697 - 98,500,990
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3
Downstream geneGsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O06.T7 (MSMg01no388_o06.b1)MSMg01-388O06.TJ (MSMg01no388_o06.g1)
ACCAG491277AG491278
length798777
length of high quality
(start - end)
292 (66 - 357)239 (83 - 321)
definitionCHROMAT_FILE: MSMg01no388_o06.b1 PHD_FILE: MSMg01no388_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:19 2005CHROMAT_FILE: MSMg01no388_o06.g1 PHD_FILE: MSMg01no388_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGCCGCTATACGACTACTATATCCCGAGGATCCGCGGAATTCAGAACGTT
TGCCGCACACTGGCAAGATCATCCAAGCTGCCTGCCCTCACCAAAGCGCC
CATGTTCTCCCCCCCTGGCTGAGGGCTTGGGAGAGGAAAGGAAGGTCTAG
GGGACTAAGATACAAGCATAAAACAAGACAATGAGATTTCACGTTGGTTA
AGTAGAAAATGAAGATGAGGTCCTTTCTCAAAAGAAAAGAAAGAAAAAAA
AAAAAGCCGGACAGTGGTGGCACACGCCTTTAATCCCAGAATTTGGAAGG
AAGAGACAGGTAGATTTCTTAGTTCAAAGCCAGCCTGTTCCACAGAGTGA
GTTCCTGCACAGCCATGGTATACGAAAAACCCTGTGTCGAAAAACAAAAA
CGTCCCATCCACCCCCCCGCTATTTAAGGGATGAGAGAAGGATCAGCAGC
TAAGAGCATTTGCTCTTGTAGAACAACCCGGATTCAGTTTCTCAACACCC
ACATGTGACCACAAACCATCCATAACTGTAGTTTTCAGCCTACCTGCGCT
TGCGCGCGTATAAATATACCTCTCTATATCTACCGGACGACCGACCGTAT
TTTTCTATGCTTACCCATACTCATCTCCATAACCAAATTCGTTCCCACCC
CCCCACGGGGGTGGCTCCCCTTCTCTCCCCCCCCCTCCCCAGGCCCAACC
CCGGCGTTCCCGCACCCCCCCTTGCCCTCTCCTTCTCCTCGGCTTCTCCG
CCACCCTCGCTCCTGTCTTGCCTCCCCATTCACCTCTCTCCCCCCCTG
NNCCTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCCCTCTTCTGGCCA
ACAAGAGCACCAGACATATATGTGGTGTACAAATATACATGCAGGCAAAA
ATATTCATACACATAAAAGTAAATAAATTCCCCTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATGTGTATATGTATCCATGTATGTGCTTAA
AGAGGTCAGAGAGGTGTTGTGATGGTTTGTAAATGCTGGGCCCAGGGTTT
GACACTATTAGAAGGTGTGGTTTTTTTGGAGTAGGTGTGGCCTTGTTGGA
GTAGGTGTGTCACTGTGGGTGTGGGCTATAACACCCTCCTCATAGCTGCC
TGGAAGCCAGTCTTCCACCCCCCCCCCTCAGATGAAGATGTACGCCAGGT
GGTGGTGTTGTTGCTCCCCCAGCTTTTTTCTCATGCACCTTGCCTTCTAT
CACCCTCGCCTCCCCCTTATATTTCCCCCCCCCCCCCTTCTCTCCTCCGG
GTCTTTTTCCCCCGTGCCGGTTTTTTTCCGCCCTCTTCTGCTCCTCCATT
CTAACCCCTGCCCCTTATTACGCCCCCTCCTCCCCCCTTTTTCCCCCTCC
TCGTTTGTCGCGCCCGTGCGCCCCTTTTTCTCTCCCTCTCTCCCCGTCCC
CTCCCTTTTTTTCCCCCCCCCCCTTCCCCCCCCTCTTCTCCCCTTTTTTC
TCCGCCCCCACCGATGTCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o06.b1 MSMg01no388_o06.b1 CHROMAT_FILE:
MSMg01no388_o06.b1 PHD_FILE: MSMg01no388_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:19 2005
         (292 letters)



>mm_chr11_98500497_98501188
          Length = 692

 Score =  511 bits (264), Expect = e-149
 Identities = 285/294 (96%), Gaps = 4/294 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcatccaagctgcctgccctcaccaaagcgcccatgttctccccccctggctgaggg 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 agatcatccaagctgcctgccctcaccaaagcgcccatgttctccagccctggctgaggg 260

                                                                       
Query: 61  cttgggagaggaaaggaaggtctaggggactaagatacaagcataaaacaagacaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgggagaggaaaggaaggtctaggggactaagatacaagcataaaacaagacaatgag 320

                                                                       
Query: 121 atttcacgttggttaagtagaaaatgaagatgaggtcctttctcaaaagaaaagaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcacgttggttaagtagaaaatgaagatgaggtcctttctcaaaagaaaagaaagaa 380

                                                                       
Query: 181 aaaaaaaaaa----gccggacagtggtggcacacgcctttaatcccagaatttggaagga 236
           ||||||||||    |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 381 aaaaaaaaaaaaaagccggacagtggtggcacacgcctttaatcccaggatttgggagga 440

                                                                 
Query: 237 agagacaggtagatttcttagttcaaagccagcctgttccacagagtgagttcc 290
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 agagacaggtagatttctgagttcaaagccagcctgttccacagagtgagttcc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)