BAC Information

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BAC

Clone NameMSMg01-388O22
Chromosome11 (Build37)
Map Location 16,966,696 - 16,967,035
singlet/doubletsinglet
Overlap gene1500041B16Rik
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek
Downstream geneLOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O22.T7 (MSMg01no388_o22.b1)MSMg01-388O22.TJ (MSMg01no388_o22.g1)
ACCAG491309AG491310
length785798
length of high quality
(start - end)
342 (72 - 413)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no388_o22.b1 PHD_FILE: MSMg01no388_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:22 2005CHROMAT_FILE: MSMg01no388_o22.g1 PHD_FILE: MSMg01no388_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGATCCGCGGAATTCAA
CAACTCACTTACAGAAATACCGGAGAACACTGCTAAAGAGTTACAAGTCC
TTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAA
AAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGA
AAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAA
AAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAG
ATAGAAACCCTAGGAAAGAAATCTGGAAACATAGATGCCAGCATCAGCAA
CAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCATAG
AGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTA
ACTCANAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACG
GATAATAGGAGTGGATGAGAATGAAGATTTTCCACTCAAAGCACCGCAAA
CCCCTCCCCCAAAATATTGAAGAAAACTCCCCAACCCTAAGAAGAAGATG
CCATGAACCTCCCAGAAGCCCACCGAACCCCCACAAAACGGGACCAAAAA
AAATTCCCCCCCACCCTTTAATCCCAAACACCCAGGGCCTAATCAAGAAT
GGATCCCACAAGCCGCGAGGGAAAAAAGGCCCGTGACCTTTAAGGGCGGG
CCCACCTAAATTACCCCCAATTTTTCCCCAAAAAA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGATATGTTGGCCTTTGTCTGT
AGCAATTTAAAGGAATAAGGCAGAGAAGATATGAAGTAGTTATGAGGCTA
ATATGTGATGGAGAAAGATGATTTTACATGTGCACAAGTGATATGAATCA
TATTTTATTATGATTATAAACAGGTATAAACTTTGTTCCTTATGCTGTTT
GGTGTAATGTTTGACAACAACTGTCACATTCCTGTACCAAAAAAAAAAAA
AATCAGCTACCAATGAGAAAGATTTATTAAGATATGATAATGGAAAAGTG
AGCTTAATAATGGAAGTGGTCAACTCACAAGAGAAAAACTTAACTCTTCT
ATAAAAATAGTACTATGACCCCACTTTCATGATTAGTAAAAATATAAATA
TATCAATGTCAAAGCTCAGCTATAAAATAATAAGAAGTTTGTGTCTTGTA
CACCTACCAAATTCACTCATCCTAGTAGCTTTGTATTAAATTGGTTAGCA
TTTTCTGCAGATATAGTTTTCATCTGAGAACAGAAACATTTGACTTCCAC
CCCACTTGCTGTTGGTTGTTGTGGTTGTTGTTGGCCGCCCCNNACACCCC
TCTCCCTCTCCTTTTTTTTTCCCCTCCTTATCACCCCCTCTTCGCCCTGT
CCCTTTCCCTTCCCCACCCTCTTTCTGTCCTCCCCCCCATTACCCTCTTC
TTCCTTCNTTTTATTGTTCTCGCTCCCCTTCCCCCTTCTATCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o22.g1 MSMg01no388_o22.g1 CHROMAT_FILE:
MSMg01no388_o22.g1 PHD_FILE: MSMg01no388_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:22 2005
         (340 letters)



>mm_chr11_16966496_16967235
          Length = 740

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgatatgttggcctttgtctgtagcaatttaaaggaataaggcagagaagatatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgatatgttggcctttgtctgtagcaatttaaaggaataaggcagagaagatatgaag 260

                                                                       
Query: 61  tagttatgaggctaatatgtgatggagaaagatgattttacatgtgcacaagtgatatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttatgaggctaatatgtgatggagaaagatgattttacatgtgcacaagtgatatga 320

                                                                       
Query: 121 atcatattttattatgattataaacaggtataaactttgttccttatgctgtttggtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatattttattatgattataaacaggtataaactttgttccttatgctgtttggtgta 380

                                                                       
Query: 181 atgtttgacaacaactgtcacattcctgtaccaaaaaaaaaaaaaatcagctaccaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtttgacaacaactgtcacattcctgtaccaaaaaaaaaaaaaatcagctaccaatga 440

                                                                       
Query: 241 gaaagatttattaagatatgataatggaaaagtgagcttaataatggaagtggtcaactc 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagaaatattaagatatgataatggaaaagtgagcttaataatggaagtggtcaactc 500

                                                   
Query: 301 acaagagaaaaacttaactcttctataaaaatagtactat 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagagaaaaacttaactcttctataaaaatagtactat 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)