BAC Information

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BAC

Clone NameMSMg01-389B05
Chromosome11 (Build37)
Map Location 72,789,842 - 72,947,393
singlet/doubletdoublet
Overlap geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneGsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389B05.T7 (MSMg01no389_b05.b1)MSMg01-389B05.TJ (MSMg01no389_b05.g1)
ACCAG491417AG491418
length751788
length of high quality
(start - end)		415 (74 - 488)385 (81 - 465)
definitionCHROMAT_FILE: MSMg01no389_b05.b1 PHD_FILE: MSMg01no389_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:33 2005CHROMAT_FILE: MSMg01no389_b05.g1 PHD_FILE: MSMg01no389_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,789,842 - 72,790,253)(72,947,009 - 72,947,393)
sequence
NCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACCAGAGCCTGGCATAGGAGAGAGGCATGAGCAAGGTC
TGCTGGCCTGCGTCCTCTGACTAAATCCTAGCAGGATTTTACCGGTTCTG
TGTTCCTTGACTCAAATAAAGATCCGAGCATGGTATGGGGAAGTGCCAGT
GGCTGAGCATGCTGGGTAATGGATCCTGCTTGTTAGAAGACTGTCCCAGA
ACAGAGAGGACAAGAAGGAAGGGATGGCACGGAGTACCTCAGGGTGCTAG
ACTGGTCACTGGCTTGAGAATGAGCTGCAATAAATCGGTCTCAGCTGGCT
GATGGACCAGGAAATGGACTGTCCTGATGGGGGAAAGGGCAGGTAGGGAC
TGGCTCTGAGCAGAGAGTCATTCTCTGGGGTCATCTCTGGATGGGAGGAA
ACTATCTCAGAGCAAGATGCGTGTTTCTTCCTTGACGGTAGAGAAGTTTT
TGTTCAGCCAGGTTCTGGGCCCACTTTCTCCCTATGTCACTGGTGCAGAA
ATGAACCCTAACCCATTAACAAGGGTTGCACCAAGAGGTGAACAAGTGCT
CCGGTATCCTGCTCCACCCGGGACCTCCCGGCGTGCCACCGTTCTCCGCT
CCCAACACTGGTCCCACCCCCTCCGAGTCCCGACCCATTGACCCCCACAG
CCGGCGCCCCCTGCCCAGCCTACTCCCCGTCCTCACCCGTCCCTTACTCC
T

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTGGTCAGAAGGGCTTT
GGCTTGTGTTCATGTACATCACTGAGGGTCTGCAATGAGAGGGCATGTGT
GAGAACGTAAGGTTCCTTCCTGGTTCCGAATGAACTTAGTGTTTCCCGAT
GAGTACACTAGGACATTCAGCACAGGGCCTTAAGAAGACTCAACGCTGGA
AGTCAAAATGTGAAGTGCTTGGAAGGCAGCTGGGACAGAAGAATGTTTGT
AAGCCATGCAGTTGGACTCTACCCAGCTGGAGTTTTCCATCTTTTCTCCA
ACTTTGTGCGTGTGTACACGTGGCAGTGTACTTGCCTGTCAATGTCAGGT
CCCCTACTCTCTCCTAGTTTTTGACAGTGTCTCACTGAGCCTGGGAGCTT
GCTGTTGTAGCTAAACTGGCTTGTTGGCAAGCCCAAAGGATATGCCTCTC
TGACCCCACCCACCCCGGCACGGACATTACATGTGTGTTTCACACCTCCA
CACTTTCTTTGTGGTTGCTGACAACCTGTACTTTGGTCCCCCTGTTATTT
TCTTTCCCTACTTATTCCCCCCCCTTTCCCTCTTTTTCCACTCTATTTGT
CTCTCTGCTTTCTTTCCCTCCTGCTTCCCTTTTTTTTTCATGTTCCTCGC
CTGTCTTTTTCCTATTTCTTTTACCCAACCCATGCTCCCCCCCCCCTATT
TTTCTATCTTTTCTCCCTCGTTTACCCCATCCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_b05.b1 MSMg01no389_b05.b1 CHROMAT_FILE:
MSMg01no389_b05.b1 PHD_FILE: MSMg01no389_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:33 2005
         (415 letters)



>mm_chr11_72789642_72790456
          Length = 815

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcataggagagaggcatgagcaaggtctgctggcctgcgtcctctgactaaatcctagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcataggagagaggcatgagcaaggtctgctggcctgcgtcctctgactaaatcctagca 260

                                                                       
Query: 61  ggattttaccggttctgtgttccttgactcaaataaagatccgagcatggtatggggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattttaccggttctgtgttccttgactcaaataaagatccgagcatggtatggggaag 320

                                                                       
Query: 121 tgccagtggctgagcatgctgggtaatggatcctgcttgttagaagactgtcccagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccagtggctgagcatgctgggtaatggatcctgcttgttagaagactgtcccagaaca 380

                                                                       
Query: 181 gagaggacaagaaggaagggatggcacggagtacctcagggtgctagactggtcactggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaggacaagaaggaagggatggcacggagtacctcagggtgctagactggtcactggc 440

                                                                       
Query: 241 ttgagaatgagctgcaataaatcggtctcagctggctgatggaccaggaaatggactgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaatgagctgcaataaatcggtctcagctggctgatggaccaggaaatggactgtc 500

                                                                       
Query: 301 ctgatgggggaaagggcaggtagggactggctctgagcagagagtcattctctggggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatgggggaaagggcaggtagggactggctctgagcagagagtcattctctggggtca 560

                                                               
Query: 361 tctctggatgggaggaaactatctcagagcaagatgcgtgtttcttccttga 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctggatgggaggaaactatctcagagcaagatgcgtgtttcttccttga 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_b05.g1 MSMg01no389_b05.g1 CHROMAT_FILE:
MSMg01no389_b05.g1 PHD_FILE: MSMg01no389_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:33 2005
         (385 letters)



>mm_chr11_72946809_72947593
          Length = 785

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtggtcagaagggctttggcttgtgttcatgtacatcactgagggtctgcaatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tttgtggtcagaagggctttggcttgtgttcatgtacatcactgagggtctgcaatgaga 526

                                                                       
Query: 61  gggcatgtgtgagaacgtaaggttccttcctggttccgaatgaacttagtgtttcccgat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gggcatgtgtgagaacgcaaggttccttcctggttccgaatgaacttagtgtttcccgat 466

                                                                       
Query: 121 gagtacactaggacattcagcacagggccttaagaagactcaacgctggaagtcaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gagtacactaggacattcagcacagggccttaagaagactcaacgctggaagtcaaaatg 406

                                                                       
Query: 181 tgaagtgcttggaaggcagctgggacagaagaatgtttgtaagccatgcagttggactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgaagtgcttggaaggcagctgggacagaagaatgtttgtaagccatgcagttggactct 346

                                                                       
Query: 241 acccagctggagttttccatcttttctccaactttgtgcgtgtgtacacgtggcagtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acccagctggagttttccatcttttctccaactttgtgcgtgtgtacacgtggcagtgta 286

                                                                       
Query: 301 cttgcctgtcaatgtcaggtcccctactctctcctagtttttgacagtgtctcactgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttgcctgtcaatgtcaggtcccctactctctcctagtttttgacagtgtctcactgagc 226

                                    
Query: 361 ctgggagcttgctgttgtagctaaa 385
           |||||||||||||||||||||||||
Sbjct: 225 ctgggagcttgctgttgtagctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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