BAC Information

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BAC

Clone NameMSMg01-389H23
Chromosome11 (Build37)
Map Location 13,306,162 - 13,415,362
singlet/doubletdoublet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H23.T7 (MSMg01no389_h23.b1)MSMg01-389H23.TJ (MSMg01no389_h23.g1)
ACCAG491739AG491740
length779621
length of high quality
(start - end)		369 (77 - 445)437 (94 - 530)
definitionCHROMAT_FILE: MSMg01no389_h23.b1 PHD_FILE: MSMg01no389_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:07 2005CHROMAT_FILE: MSMg01no389_h23.g1 PHD_FILE: MSMg01no389_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,414,994 - 13,415,362)(13,306,162 - 13,306,598)
sequence
NNNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTGGAATAATCCATCACAATTTTATCTGAATTCGGTTC
CTAAAATTTAAGGGAACTTTTCAAGCTATGATGTGGCAGAAGATGTCATC
TATTACAATTTCTGTGTCTCCCCAATTCTCCTCTTATGTAAATAATCTCT
TTGCTAGTATAGTGAAAGTAAAAAGATATTTATATAAAGTAATAAAACAG
CCCATACTTTAAAAACAGTAAATAAAAAAGTAATATAGCTGTGAAGTGTT
GCTGCATTTATTCCTAGCATTTGGAAGGCAGATACAGGCAGAACTCTGTG
AGTTCAAGTGCAGCCTGGTCAACAAAACTAGTTCCAGGACAGGCAGACAC
AGAGAAATCCTGTCTCAGGAATCAAATCAAATCAAATCAAATCAAATCAA
ATAGAANAACCCCATCATTACAACAAAGATCATTTCTAGTTCTAGATAAA
CTTATCCAAATATAATTTACCAAATTTTTAGAGAAATGAAGATTGAGAGG
TCCTAAAAAACATTTACCAAATTTGTCCCCCCTTTACCTATTTAGAGATT
GAGGAATTTCTATGTTTCCTAAATTTTTGCCCCTGTGAATGAAATTAACC
CCTATCCCTTCCCCGGGTTTTAAAAACCCGGGCCCCCCCTTTAAGCACAA
TACCTTTCTTGCCCAAAATGGGGCCCCCCGAACCTAACCTCCTTAACTCC
CCAAATCTTCCCCTTTCCCCCCCTTTTTT

NNNNNNNNNNNNNNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTATC
TCCATCTTAAACACAGGAGACCTCTGCAATTCCCTACTTTCATGATCATG
TAAACTGTTCTCTATAAGATAACTTTATTAATGGATAGATTTAGAAAAAT
GTGGATGCATGAATGATACATGGGAGACAAAGAGATGATACATAAATGAT
GGATGGTATACATACATATGATCAATGATATATTCATAAATGATTAATAA
TAGAATCAATAGGTGGTAGACATAAAGACTATAGAATAGATAATGTGTTT
GATAGATAGATAGGTAGATAGATAGATAGATGCCAAATGACAGATAAATA
GATGCTGGATACTAAATATATAATATATATGTAGAAATCAGATACAGCCC
CTTCAAGGTGCCACACCTCCTAATCTTTCCCAAAAACTTCCACAAACTGA
GGACAGGACCAAGTATGTAAATGTATGAGCCTATCACCATTTTCATTCAG
TACAGAAGCCACATGCCTCATATAGAGATATAAATTGATTGTTTTTTATA
AACAGCTATTATATAGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h23.b1 MSMg01no389_h23.b1 CHROMAT_FILE:
MSMg01no389_h23.b1 PHD_FILE: MSMg01no389_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
         (369 letters)



>mm_chr11_13414953_13415721
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaattttatctgaattcggttcctaaaatttaagggaacttttcaagctatgatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cacaattttatctgaattcggttcctaaaatttaagggaacttttcaagctatgatgtgg 351

                                                                       
Query: 61  cagaagatgtcatctattacaatttctgtgtctccccaattctcctcttatgtaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagaagatgtcatctattacaatttctgtgtctccccaattctcctcttatgtaaataat 291

                                                                       
Query: 121 ctctttgctagtatagtgaaagtaaaaagatatttatataaagtaataaaacagcccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctctttgctagtatagtgaaagtaaaaagatatttatataaagtaataaaacagcccata 231

                                                                       
Query: 181 ctttaaaaacagtaaataaaaaagtaatatagctgtgaagtgttgctgcatttattccta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 230 ctttaaaaacagtaaataaaaaagtaatatagctgtgaagtgttgctgcatttattccca 171

                                                                       
Query: 241 gcatttggaaggcagatacaggcagaactctgtgagttcaagtgcagcctggtcaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gcatttggaaggcagatacaggcagaactctgtgagttcaagtgcagcctggtcaacaaa 111

                                                                       
Query: 301 actagttccaggacaggcagacacagagaaatcctgtctcaggaatcaaatcaaatcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 actagttccaggacaggcagacacagagaaatcctgtctcaggaatcaaatcaaatcaaa 51

                    
Query: 361 tcaaatcaa 369
           |||||||||
Sbjct: 50  tcaaatcaa 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_h23.g1 MSMg01no389_h23.g1 CHROMAT_FILE:
MSMg01no389_h23.g1 PHD_FILE: MSMg01no389_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
         (437 letters)



>mm_chr11_13305962_13306798
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtatctccatcttaaacacaggagacctctgcaattccctactttcatgatcatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtatctccatcttaaacacaggagacctctgcaattccctactttcatgatcatgtaa 260

                                                                       
Query: 61  actgttctctataagataactttattaatggatagatttagaaaaatgtggatgcatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgttctctataagataactttattaatggatagatttagaaaaatgtggatgcatgaa 320

                                                                       
Query: 121 tgatacatgggagacaaagagatgatacataaatgatggatggtatacatacatatgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatacatgggagacaaagagatgatacataaatgatggatggtatacatacatatgatc 380

                                                                       
Query: 181 aatgatatattcataaatgattaataatagaatcaataggtggtagacataaagactata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgatatattcataaatgattaataatagaatcaataggtggtagacataaagactata 440

                                                                       
Query: 241 gaatagataatgtgtttgatagatagataggtagatagatagatagatgccaaatgacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatagataatgtgtttgatagatagataggtagatagatagatagatgccaaatgacag 500

                                                                       
Query: 301 ataaatagatgctggatactaaatatataatatatatgtagaaatcagatacagcccctt 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatagatgctgaatactaaatatataatatatatgtagaaatcagatacagcccctt 560

                                                                       
Query: 361 caaggtgccacacctcctaatctttcccaaaaacttccacaaactgaggacaggaccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaggtgccacacctcctaatctttcccaaaaacttccacaaactgaggacaggaccaag 620

                            
Query: 421 tatgtaaatgtatgagc 437
           |||||||||||||||||
Sbjct: 621 tatgtaaatgtatgagc 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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