BAC Information

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BAC

Clone NameMSMg01-390E07
Chromosome11 (Build37)
Map Location 86,930,838 - 86,931,081
singlet/doubletsinglet
Overlap gene1110001A07Rik
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11
Downstream geneTrim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390E07.T7 (MSMg01no390_e07.b1)MSMg01-390E07.TJ (MSMg01no390_e07.g1)
ACCAG492324AG492325
length765745
length of high quality
(start - end)
367 (78 - 444)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no390_e07.b1 PHD_FILE: MSMg01no390_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:08 2005CHROMAT_FILE: MSMg01no390_e07.g1 PHD_FILE: MSMg01no390_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTGTATTTCTTAAGATTTGCTTTAAGACCTAGAATGTGA
TCCATTTTGGAGAGGGTTCCATGGGCTTTTAAGGAAAATGTATATTCCTT
GTCTGCAGGATAGACTGTCCTGGAGAAAACACAGGGTCCATTTGATCTAG
AGTGGAGCACACAATTTCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGCGT
GTGCATGCTTATATTAGGTAACTTAACTTGAAGTGAGTGTGGAGTCTTGA
AGTCTCTTACTGTAGTTTCCGGATCTATTTTAGCTTTCATGCTCACTAGT
GTGTGTTTTGCTAAACTTGGAACTTCAACACTTGTTGCCTATATATTTAC
AATTTTTCTATGATCTTAATTACATTTTTTTGGTGTTTTTGAGACAGGGT
TTCTCTGTATAGCCCTGGTTGCCCTGGAACTCACTCTGTAGACCAGGCTG
GCCTCCAACTCAGACATATGCCTGTCTCTGCCTCCCGAGCGCTGCGATTA
CAGGCCCGCGCCCCCACTGTCCACCAGTTACACCGTCTCATCACTCGCCA
CGTATCCATACTGTCCCCCCCCCTCTTTTTGACCCTGGACCTGCACTTGG
CCCCGCCCTGTCCCGACTGGTCCTGCTCCCCCTTTCACCCTTCCTTCCCC
CCGGAATCTTTGTCTCCGCCCCCTCCCCCCCACCCGAGGGAACCTTCAAT
TCCCCCCCTGTACTN
NNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCAGAAAATTCATCCATGTTGTATCGCTGCC
AGAATTTCCTTTAAAATTTTAAGAATTTATTTGATTTTGTGTGTATCTAT
ACTTGTGTGCTTGTGTACAAACAAGGGTATGTCCTTTCTAGCTGGGCCTG
ATGGTGCACACCTTTTATCATAGTGTTTAGGAAGTAGAAGCAGATGGCTC
TAAGTAGGTCAGCCTGGTCTATGTAGTGTTTTAGGTCAACCAGGGTTGCA
TAGTGGTGAAATAAATATGTGGTATAATTTTTTTGTAAATATTGATTTAA
AAAGAAGCTTAATATTTCTTCATCATCATTTAATATATATTAACCTTATT
TTTTCTGATGTAGAAAAATGCAGTTACAGTTTTAAAGGAATTATCAGCGA
TAAAGTCTCGCTATCAAGCTTTATGTGCTCGCTTTAAGGCAATTTCTGTT
GAGCAAAAGGAGACCAAGAGCTGCATTTGTGCTACTTTGAACAAGACAAT
GACCATGATACAAGAACTACAAAAGCAAACCAACCTGGAGGTAATGTTTC
CAGTTTATAGGTTGGAAATGTGAAGTTGTTTCCCACCCCCACTGCCCCCC
CCCAGACAGGTTTCTCTGTTTTTTTTCGCGCCTCTCCTGTATCTCCTTTT
TTCCAACACTTCCTTCCATACGCCCTTCTCCCCCCTCTTACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_e07.g1 MSMg01no390_e07.g1 CHROMAT_FILE:
MSMg01no390_e07.g1 PHD_FILE: MSMg01no390_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:08 2005
         (245 letters)



>mm_chr11_86930638_86931282
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccatgttgtatcgctgccagaatttcctttaaaattttaagaatttatttgattttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 catccatgttgtatcgctgccagaatttcctttaaaattttaagtatttatttgattttg 260

                                                                       
Query: 61  tgtgtatctatacttgtgtgcttgtgtacaaacaagggtatgtcctttctagctgggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtatctatacttgtgtgcttgtgtacaaacaagggtatgtcctttctagctgggcct 320

                                                                       
Query: 121 gatggtgcacaccttttatcatagtgtttaggaagtagaagcagatggctctaagtaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 gatggtgcacaccttttatcatagtgtttaggaagtagaagcagaag-ctctaagtaggt 379

                                                                       
Query: 181 cagcctggtctatgtagtgttttaggtcaaccagggttgcatagtggtgaaataaatatg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 cagcctggtctatgtagtgttttaggccaaccagggttgcatagtggtgaaataaatatg 439

                
Query: 241 tggta 245
           |||||
Sbjct: 440 tggta 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)