Query= MSMg01no390_f17.b1 MSMg01no390_f17.b1 CHROMAT_FILE:
MSMg01no390_f17.b1 PHD_FILE: MSMg01no390_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:15 2005
(482 letters)
>mm_chr11_38484919_38485800
Length = 882
Score = 893 bits (462), Expect = 0.0
Identities = 474/478 (99%)
Strand = Plus / Plus
Query: 5 gaattcatttactactaaagattattgtattaaaattccagactgtgtgttttctatctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttactactaaagattattgtattaaaattccagactgtgtgttttctatctc 264
Query: 65 aaaggtattcagggatttagtttgaagtttcttaccatgacaacgattttgcaaaggaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggtattcagggatttagtttgaagtttcttaccatgacaacgattttgcaaaggaat 324
Query: 125 tataccttactccatttgacttaacgcaggtgcctcatacattctctcatgaaaatatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataccttactccatttgacttaacgcaggtgcctcatacattctctcatgaaaatatgt 384
Query: 185 aggttcttggattaataattaaaatttttaaaggtgagaaaggtctgcttttttttttaa 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 aggttcttggattaataattaaaatttttaaaggtgagaaaagtctgcttttttttttaa 444
Query: 245 ttaaagcatgcgatagacctgtataataaaaagaaggtgggtacatttaacaaacatttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaagcatgcgatagacctgtataataaaaagaaggtgggtacatttaacaaacatttc 504
Query: 305 tgaggaaaatacatcaggaaatgccgctgataccacagtgacaagcaagaactcatgtag 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 tgaggaaaatacatcaggaaatgccgctgataccacagtgacaagcaagaactcatctag 564
Query: 365 gaaaatgagcagctttcttcatgatataagaaaagtcacaagaagaatgagacaattaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaatgagcagctttcttcatgatataagaaaagtcacaagaagaatgagacaattaag 624
Query: 425 atatcaaggattcacatctgaagctgaagctgcaaatggatggtaattttggcaacca 482
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 agatcaaggattcacatctgaagctgaagccgcaaatggatggtaattttggcaacca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_f17.g1 MSMg01no390_f17.g1 CHROMAT_FILE:
MSMg01no390_f17.g1 PHD_FILE: MSMg01no390_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:15 2005
(509 letters)
>mm_chr11_38631540_38632451
Length = 912
Score = 961 bits (497), Expect = 0.0
Identities = 507/512 (99%), Gaps = 3/512 (0%)
Strand = Plus / Minus
Query: 1 ttttaaaatttaattctcccatctcactttttccccctgcttctgcgagccttttcccct 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttttaaaatttaattctcccctctcactttttccccctgcttctgcgagccttttcccct 653
Query: 61 catgtaaattgcagcaggtgcacaaattgaagacatcacaattaaatgtaatcaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 catgtaaattgcagcaggtgcacaaattgaagacatcacaattaaatgtaatcaaatatt 593
Query: 121 ttaggctctaatgaactgctccaggaaaacaagtcaaaag---aaaaaaaaaaagtccat 177
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 592 ttaggctctaatgaactgctccaggaaaacaagtcaaaagaaaaaaaaaaaaaagtccat 533
Query: 178 aagtgagtggattttcaaacacccaaggcaccataggaccaattaagagagtcagatacc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aagtgagtggattttcaaacacccaaggcaccataggaccaattaagagagtcagatacc 473
Query: 238 aggacacatactgacattaattatctttgagttcagggaaataaaaaataaaagcaacaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aggacacatactgacattaattatctttgagttcagggaaataaaaaataaaagcaacaa 413
Query: 298 ttatcataataaatctccacacagtgcttgtaagttgtgctaatctacagcacacctggg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttatcataataaatctccacacagtgcttgtaagttgtgctaatctacagcacacctggg 353
Query: 358 tttcagatatttaaggcgaatactcaatcagttggtaacgacctcacagaggggctcatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttcagatatttaaggcgaatactcaatcagttggtaacgacctcacagaggggctcatg 293
Query: 418 ggacatttttccttcctgtgatctgccaatcagagagaggggctaanatgatgtccaaca 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 292 ggacatttttccttcctgtgatctgccaatcagagagaggggctaaaatgatgtccaaca 233
Query: 478 gctatgtctgctttcttcagcatcgctcctgt 509
||||||||||||||||||||||||||||||||
Sbjct: 232 gctatgtctgctttcttcagcatcgctcctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 912
Length adjustment: 10
Effective length of query: 499
Effective length of database: 902
Effective search space: 450098
Effective search space used: 450098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
