NNNNNNNNTTCTTAAATTGCGGCGCTAAACGACTCCTATAGTCAGAGGAT
CCGCGGACCCTGTGTGTCAGAAGAGGGTGCCAGATGCCCTGGACCTGGAG
TTACAGGTGGTTAGAACTGAATTCAGGTCCTCTGGAAGAGCAGCAAGCAC
CAAGCTATCTCCTCCAGCCTGGATACTAACCATTCTAAATAAGTTACACT
TGAAGATGTCTTTAAATACAGTGTTTTATCCAAGTTGAATGCTTCTGTAA
GTCAATGAGGATGCTACTAATATTTACCAGTAAAACAAGTAGACACTGGG
AACCGTCTAATGCAAACCTATAAAATCTGCCTCCTGCACAAGGAGCATAA
GATGTTCATCATGTCTTTGTTTTGTTGTTGTTGTTGTCTGATATTTTGAG
ACAGGGTCCTTTTTGTGTCACCTGAATGATCTCTGAACACACCACGTAGC
CTGGGCTTGCATCAAACTTGTGATCCCTCTGCCTCAGCCTCCTAAATGCT
GTAATTACAAGTGTGTACCAACATCCAGTCCACTTGGGCCTCTGACAATT
TCAAGCCTGCCGGTATTTGTGAGAACTGGGGGTGAACTTCTGGAAAAGGN
AACCTGCCAGCTGACCTCCTTAGAACGGGGAGCCAAGGGCCCCCACCCCT
TAAAAAAAAGGAAGGACAGCCCCGGAAAACAAGAGTGGCCCAAAAAAAAA
CATGGATGCCAGGGGACGGCCCCCGCCTCTTATACCCACA

NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGGGCGGACCTCCA
TTCTAACCACAAGCTTGTGGTTTGCCAGCTGGGTGCCCTTGGGCAAGTTC
ATTTTCTCCTGCGGACATCCCTCATTGTAAAATAACAGCATTGAGTCCCG
AAGCCTGACTCTCAGACTTGCCAGGACTTTGAAATCACCTGGGGAAATAT
AAAATTTCCCATGCCTAGACTGTATCCCCTGGGATCTTGATTTAACGATT
TTGGGGTGCGTTTTGGATGTTGGGATTTTTGTAAAGCTCACTGCCAGTGT
TTGAGAAAAGCAAAATTTGCAGAGAAATTCTTCAAATTATAGGGAAGAAC
AAAGAGAGAAGTTGAATGCTTGGTGTAAGGTACGGACTGACCAAAGTCAC
CCTGCTTTCCTTAGTAAGGTAATCGTGACTAACTTGCTCTTGCTTCTGGC
GCTGTTGCTTTGTTTGGNGGTAGTCATAGCGATGCATGACAGCCAATCTG
CAATCTAACCTCCCTTATTTATCCCATCTGAAGTGAAGGGCAATCGTGAA
TGTAGCCCGAATCTTAGACATACCAAAATTTGATTACTTTCCCATCCGGG
GAGGAGACTAAGACGAAGTCCNCCGGGTCTGGGAAAACAGCTATGGAGAA
CCGCTTTTTGGGGTAAACAAATTGATTATAATAACCTGGCGCC

Query= MSMg01no390_l23.b1 MSMg01no390_l23.b1 CHROMAT_FILE:
MSMg01no390_l23.b1 PHD_FILE: MSMg01no390_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:45 2005
         (383 letters)



>mm_chr11_34970527_34971309
          Length = 783

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   accctgtgtgtcagaagagggtgccagatgccctggacctggagttacaggtggttagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 accctgtgtgtcagaagagggtgccagatgccctggacctggagttacaggtggttagaa 637

                                                                       
Query: 65  ctgaattcaggtcctctggaagagcagcaagcaccaagctatctcctccagcctggatac 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 636 ctgaattcaggtcctctggaagagcagcaagcaccaagccatctcctccagcctggatac 577

                                                                       
Query: 125 taaccattctaaataagttacacttgaagatgtctttaaatacagtgttttatccaagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taaccattctaaataagttacacttgaagatgtctttaaatacagtgttttatccaagtt 517

                                                                       
Query: 185 gaatgcttctgtaagtcaatgaggatgctactaatatttaccagtaaaacaagtagacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaatgcttctgtaagtcaatgaggatgctactaatatttaccagtaaaacaagtagacac 457

                                                                       
Query: 245 tgggaaccgtctaatgcaaacctataaaatctgcctcctgcacaaggagcataagatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgggaaccgtctaatgcaaacctataaaatctgcctcctgcacaaggagcataagatgtt 397

                                                                       
Query: 305 catcatgtctttgttttgttgttgttgttgtctgatattttgagacagggtcctttttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catcatgtctttgttttgttgttgttgttgtctgatattttgagacagggtcctttttgt 337

                              
Query: 365 gtcacctgaatgatctctg 383
           |||||||||||||||||||
Sbjct: 336 gtcacctgaatgatctctg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no390_l23.g1 MSMg01no390_l23.g1 CHROMAT_FILE:
MSMg01no390_l23.g1 PHD_FILE: MSMg01no390_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:46 2005
         (436 letters)



>mm_chr11_34953550_34954385
          Length = 836

 Score =  833 bits (431), Expect = 0.0
 Identities = 434/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgggcggacctccattctaaccacaagcttgtggtttgccagctgggtgcccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgggcggacctccattctaaccacaagcttgtggtttgccagctgggtgcccttgg 260

                                                                       
Query: 61  gcaagttcattttctcctgcggacatccctcattgtaaaataacagcattgagtcccgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagttcattttctcctgcggacatccctcattgtaaaataacagcattgagtcccgaa 320

                                                                       
Query: 121 gcctgactctcagacttgccaggactttgaaatcacctggggaaatataaaatttcccat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcctgactctcagacttgccaggactttgaaatcacctggggagatataaaatttcccat 380

                                                                       
Query: 181 gcctagactgtatcccctgggatcttgatttaacgattttggggtgcgttttggatgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagactgtatcccctgggatcttgatttaacgattttggggtgcgttttggatgttg 440

                                                                       
Query: 241 ggatttttgtaaagctcactgccagtgtttgagaaaagcaaaatttgcagagaaattctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatttttgtaaagctcactgccagtgtttgagaaaagcaaaatttgcagagaaattctt 500

                                                                       
Query: 301 caaattatagggaagaacaaagagagaagttgaatgcttggtgtaaggtacggactgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaattatagggaagaacaaagagagaagttgaatgcttggtgtaaggtacggactgacc 560

                                                                       
Query: 361 aaagtcaccctgctttccttagtaaggtaatcgtgactaacttgctcttgcttctggcgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagtcaccctgctttccttagtaaggtaatcgtgactaacttgctcttgcttctggcgc 620

                          
Query: 421 tgttgctttgtttgg 435
           |||||||||||||||
Sbjct: 621 tgttgctttgtttgg 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)