Query= MSMg01no391_c03.b1 MSMg01no391_c03.b1 CHROMAT_FILE:
MSMg01no391_c03.b1 PHD_FILE: MSMg01no391_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:15 2005
(479 letters)
>mm_chr11_10618190_10619068
Length = 879
Score = 710 bits (367), Expect = 0.0
Identities = 412/427 (96%)
Strand = Plus / Minus
Query: 53 agggaccacaagcttttaaaacctaccatatagacaggaatgaccttaaacttttgatct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 879 agggaccacaagcttttaaaacctaccatatagacaggaatgaccttaaacttctgatct 820
Query: 113 tcttgcctctgacacataagcactgggatgatagatatgtaccaccatgtctggtttatg 172
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 819 tcttgcctctaacacataagcactgggatgacagatatgtaccaccatgcctggtttatg 760
Query: 173 ttataggggaacggaaggttggaatttgtgtgtaaccaggcaaatcagtataccatgtga 232
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttataggggaatggaacgttggaatttgtgtgtaaccaggcaaatcagtataccatgtga 700
Query: 233 gctacatgctagtcccttacttatttttgagccagcatcttattatgctattcaggttgc 292
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gctacacgctagtcccttatttatttttgagccagcatcttattatgctattcaggttgc 640
Query: 293 ctggaatcttatctttgtaagtctccaaattttctgtggtggttagggttgggaaaggag 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 639 ctggaatcttatctttgtaagtctccaaattttctgtggtggttagggttgggaaatgag 580
Query: 353 ctctggatcgtactgattttagactaagctaaccttatctaaatataataactcaaatgg 412
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 579 ctctggatcctactgattttagactaagccaaccttatctaaatataataactcaaatag 520
Query: 413 aaaaatatacaaatgaggaaacctttcattattcatagcgtttgtgttcttgcaatgcat 472
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 519 aaaaatatacaaatgaggaaacctttcattattcatagcgtttgtgttcttataatgcat 460
Query: 473 cttactc 479
|| ||||
Sbjct: 459 ctaactc 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_c03.g1 MSMg01no391_c03.g1 CHROMAT_FILE:
MSMg01no391_c03.g1 PHD_FILE: MSMg01no391_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:15 2005
(513 letters)
>mm_chr11_10451640_10452551
Length = 912
Score = 876 bits (453), Expect = 0.0
Identities = 508/547 (92%), Gaps = 36/547 (6%)
Strand = Plus / Plus
Query: 1 tctgaactaaatctccatcatcccaacatgagccattttattattaaatatgtcatcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tctgaactaaatctccatcatcccaacatgagccattttattattaaatatgtcatcaat 227
Query: 61 tgttcattggcatagcattgttctttcaattttagaaaaattactactcaaaatctttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgttcattggcatagcattgttctttcaattttagaaaaattactactcaaaatctttta 287
Query: 121 gaatttgaaagatagttt------------------------caaa---------catga 147
|||||||||||||||||| |||| |||||
Sbjct: 288 gaatttgaaagatagtttagtggttaagagcacttgtccctgcaaaggagcaccacatga 347
Query: 148 tggcactggcatcaggcatgtgatgtgcatgtatacacacaggcaaacatgtatacacat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tggcactggcatcaggcatgtgatgtgcatgtatacacacaggcaaacatgtatacacat 407
Query: 208 agaa-taataaaataaataaatattttaataatttaaatttgaatctttaaatgtacaac 266
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 -gaagtaataaaataaataaatattttaataatttaaatttgaatctttaaatgtacaac 466
Query: 267 tgcaacagtaaaacagagaggggagattacttaaccttagcatttacctagaaataaatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgcaacagtaaaacagagaggggagattacttaaccttagcatttacctagaaataaatg 526
Query: 327 gtctttagtggtaaaaattgtatgcaatggcatatggaaacgtaaaggaaacctcactgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtctttagtggtaaaaattgtatgcaatggcatatggaaacgtaaaggaaacctcactgg 586
Query: 387 tactcatagacaattatattaaggaatagatattatatatctcacaggaattaattttaa 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 587 tactcatagacaattatattaaggaatagatattatatacctcacaggaatta-ttttaa 645
Query: 447 ttattaccccaaagataggaaaccacgtgattgcacaccagatctggtttccatctatta 506
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttattagcccaaagataggaaagcacgtgattgcacaccagatctggtttccatctatta 705
Query: 507 acctgag 513
|||||||
Sbjct: 706 acctgag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
