BAC Information

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BAC

Clone NameMSMg01-391I19
Chromosome11 (Build37)
Map Location 82,348,867 - 82,541,592
singlet/doubletdoublet
Overlap geneCct6b
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneCcdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I19.T7 (MSMg01no391_i19.b1)MSMg01-391I19.TJ (MSMg01no391_i19.g1)
ACCAG493295AG493296
length759783
length of high quality
(start - end)
247 (61 - 307)156 (86 - 241)
definitionCHROMAT_FILE: MSMg01no391_i19.b1 PHD_FILE: MSMg01no391_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005CHROMAT_FILE: MSMg01no391_i19.g1 PHD_FILE: MSMg01no391_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,348,867 - 82,349,113)(82,541,437 - 82,541,592)
sequence
TGCGGCGCTATACGACTACTATATTTCCAAATCCGCGGAATTACAGGCTG
TCCTGGGTGGATGAGCTGCCTGGAGAGCTTTTAGCTAATGGGGGCCCCAC
CATGTTGTGTCAGCGATTAGGCAGGTAGGATTCAAGTTCCCCTGTAATGG
GAAGGATGTAGGAGGTGAAGAGTTCAAGCGACTGTTTCAGCTCAGCACAT
CAGGTTGTGTCTCTCAGAGGCCTCACGGGCCACCACTGGCCTTAGGAGTG
GCCCCATCACTGAGAGATCCTGAAGGTCATCCTGGTCCTGAGCTCTTCAA
ACCCCAAAATTTTTATGGAGCCCCTCTGCTTGCTATGTCAATTCAGCGAT
GTCTTACAATACCTATGCTGTCTGTTTTGGAGGCCAAGGACGCTATGCTG
TACCCCCCGCCTATTGTACCCTATAAATTGTCTTCTCCATCACAAGGAGG
GCCCTCAGATCTGAGGCTGGGACTCCAACTACACTCGCCCCCACCCACTG
ACACCCCCCCTCTCCCCGCCCCTCCCTTCTGATTCTCACATAGCCACTTA
CATTTTTCCACAGATTGCCCGATTCCCCTCCTCCCTGCCTTCGGCTTCCT
TTTTCCCCATCCCTGGTCTTCCCCTCTCCTCACCCTCCCTCCCTCCTTTC
CCCCTCCTGCCCCCCCCCGCTCCCCCCTCTTTTCTCCTCCTCCTCCGTTC
TCCTTCCTCCTTTTTTTCTCCCCCCCCTCCTTTCCCCTTCTCCTCCTCCC
CTATATCCN
TGATGTGGGAGGCCTGGNGGNCGCCTGGTACACCACTGGAGGNGAACTAN
AGAAGTACCAGCAAAACTCTCAGGCCNCAGCTGGNTATACTGCTGCGGAG
TTGCCCGGAGTCTGCAGGGCACCCCTCACCCCAGACCTCTGTGTTCACAG
AACTCCTTGCAATCCTCACCCATGAAACAAAGAGATGAGTCATGTGGTCG
GCACAGCCCAGCAGACTTCTGTGAGGCCAACATACTGCCAGGTTTTTTGG
CCCCTGCTACGTGGATTTACAACTTGTAGCCTTAAGATTTTTTTTCTCTT
TCTGTGCATTGCGTCGCTGGAATCGGGATGAGCGCACTGAATGCGCAGAC
TGTCTTTGATACTGTAACCATTCTTACATCATTTCCTTCAGTCCACCACC
ATAAGTCCCCCCTGTATCTGGTGTCATCGTTGGCTTCTTGAGTGCTGCCA
GTTTCCATTGCCTGATCCTCCTCCTCCTCGCACCGGCCTATTTCTCTTCA
TCTTCCACCTCCTTGCGCCTGGTATTGTTTTCCACTTTTTTCCCCCTCCC
CGTTGCTATTGCTTACCCTTCTTCTTTCTTCCCCTTCCCCTTTTCCCCCC
TCTCTTTCTTCCTTTCCCCCTCCCCTCCCCTTCTCCCCCTCTTTTTCTTT
TTCTTCCTCTTTCCCCCCGCACCTCTATTCTTACACCCCCTCCCCCCCCC
CTCCTTTTCCCCCCTGCCCGGTGTCCTTCCTTCCTCTCCCCCCCCCTTCC
CCACCTCCCCTCACCATTTCCACTATCTTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i19.b1 MSMg01no391_i19.b1 CHROMAT_FILE:
MSMg01no391_i19.b1 PHD_FILE: MSMg01no391_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:48 2005
         (247 letters)



>mm_chr11_82348667_82349313
          Length = 647

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagctgcctggagagcttttagctaatgggggccccaccatgttgtgtcagcgattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagctgcctggagagcttttagctaatgggggccccaccatgttgtgtcagcgattag 260

                                                                       
Query: 61  gcaggtaggattcaagttcccctgtaatgggaaggatgtaggaggtgaagagttcaagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtaggattcaagttcccctgtaatgggaaggatgtaggaggtgaagagttcaagcg 320

                                                                       
Query: 121 actgtttcagctcagcacatcaggttgtgtctctcagaggcctcacgggccaccactggc 180
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 321 actgtttcagctcagcacatcaggttgtgtctctcagaggcctcacaggccaccaccggc 380

                                                                       
Query: 181 cttaggagtggccccatcactgagagatcctgaaggtcatcctggtcctgagctcttcaa 240
           |  |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 381 caaaggagtggccccatcactgagacatcctgaaggtcatcctgatcctgagctcttcaa 440

                  
Query: 241 accccaa 247
           |||||||
Sbjct: 441 accccaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_i19.g1 MSMg01no391_i19.g1 CHROMAT_FILE:
MSMg01no391_i19.g1 PHD_FILE: MSMg01no391_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:48 2005
         (156 letters)



>mm_chr11_82541237_82541792
          Length = 556

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatactgctgcggagttgcccggagtctgcagggcacccctcaccccagacctctgtgtt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tatactgctgcggagttgcccagagtctgcagggcacccctcaccccagacctctgtgtt 297

                                                                       
Query: 61  cacagaactccttgcaatcctcacccatgaaacaaagagatgagtcatgtggtcggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cacagaactccttgcaatcctcacccatgaaacaaagagatgagtcatgtggtcggcaca 237

                                               
Query: 121 gcccagcagacttctgtgaggccaacatactgccag 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gcccagcagacttctgtgaggccaacatactgccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)