BAC Information

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BAC

Clone NameMSMg01-391O21
Chromosome11 (Build37)
Map Location 93,993,742 - 93,993,988
singlet/doubletsinglet
Overlap genenone
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431
Downstream geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391O21.T7 (MSMg01no391_o21.b1)MSMg01-391O21.TJ (MSMg01no391_o21.g1)
ACCAG493585AG493586
length778785
length of high quality
(start - end)
240 (77 - 316)248 (72 - 319)
definitionCHROMAT_FILE: MSMg01no391_o21.b1 PHD_FILE: MSMg01no391_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:18 2005CHROMAT_FILE: MSMg01no391_o21.g1 PHD_FILE: MSMg01no391_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGTCCAGCATCCGCGGAATTCACTCG
GTAGACCCCCCTAGCCTCAAACTCAAGAAATTTGCCTGCCTCTGGCTCCA
CTGAGATTAAAGGTGTGCGCCACTATGCCCTGCTTTTTCTTGTTTTTACT
TTAATCGTGTGTATGGGTGTTTGGCCTGCACACTGTGCATCCTGTGCATG
TCTCCTGCTCCAAGGCCAAAAGAGGTGTCAGATCCCCTGAGACTGGAGTT
TCAGTTCTGAGCTGTCCTGTGAGTAATGAATGGGAACTGAACCCATCCTC
TGGAAGAGCAAAGTGCTTTTCACCACGGAGCCTTCTCTCCAGCCCCAAGA
ACAAAACTGATGGCCTTTGTTATATTTCAGTAGATATTTAAACTTTAAAA
GTAACCTCGTTGCCGGACGTGGTGNNTTCACCCCCTCATCCATCCCCCGA
AAGAAAAAAGTTGGTTTAATTTCAGCCTTCCCCCCCCCCCCCCCACCAAA
AGGTTTTTTTCCCCCCCCCCCAAAAACCGTGTTTTTCCCCTTTTTTCCCC
CCCCCCCCAAAAAACGGGAGCCCCCCCCAAAAAATTGCCCCCTTTTTTTT
TTTTTTTTTTCTCAAATTTTCCTCTGTCCCTTTTTTTTGNNGNGCCACAA
ACAGACCCCCCCCCAAATTTTAGGGTCCCTCCCCCCAAACCCCCCCCCAG
TCCCCCTGTTCCCTTTCCCCCCCCCCCCCAACCCCTCCAAAAAATTTTTT
TTTTCTTAAACACCCATCCCCCCCCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACACACTCCCTTCAGATGAATGGTAGGA
GACCTGCCTAGGTCATAATCATTACCAGATTTCCCTGAAGAGGCCACAGC
AAGAACTGCTGGTGGAAAGGCTTTTAGCATGAGGTGGATGGACCCTCCTG
GAGTCCTTGTCACCTGTCCTCTAAGGCCATGGCTCTCAAGTGGATGGATG
CTTTTGTATTCCCAGCGGACACTTAGCAGCATCTAGAACCCGTTTCTCTT
GTCACAAATGGAGAGTGGTTTTTTTTAGACATTTTTAGTGGGTCAGGACC
AAACATGATGCTCTAAGCCTCTTAGGGCTCAGGACAGAACTGAAGACGGG
CCAGCCAGCTGACACCCACACGCCTGACCTCCAGCTTTTGTAATGATCTT
TGGGTTCTTGTCCCCCTGCCCAGCCCAGGGAAGTTTCTAGAATAGTCCCT
GCCGACTTCTCAACTCTTTCACCAGCGACAAGAGCCCCTGGAAAGACCCC
CAAGCCTGGACCCTCCCCCCTTGTTTCATGAACCCCGCTGTCCCCTGGAA
TCGCCTGCATCCTCTGCCCCCGACTCCTCTTTCGTACCCCCACACTCCCC
TTCTCTCCCTCTTCCCCCCCCCCCCCCCTAAATTTCCCCTCCTCCCCCCT
AACCCCGCCCCCTTTCTCCTTTCCCCCCTCCGTCTCTTTCCTCTCCCCCC
CCTTCTTCCTCACCACACCCTTTCCCCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_o21.g1 MSMg01no391_o21.g1 CHROMAT_FILE:
MSMg01no391_o21.g1 PHD_FILE: MSMg01no391_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:18 2005
         (248 letters)



>mm_chr11_93993631_93994278
          Length = 648

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacactcccttcagatgaatggtaggagacctgcctaggtcataatcattaccagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cacacactcccttcagatgaatggtaggagacctgcctaggtcataatcattaccagatt 299

                                                                       
Query: 61  tccctgaagaggccacagcaagaactgctggtggaaaggcttttagcatgaggtggatgg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 298 tccctgaagaggccacagcaagaactgctggtgaaaaggcttttagcatgaggtggatgg 239

                                                                       
Query: 121 accctcctggagtccttgtcacctgtcctctaaggccatggctctcaagtggatggatgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 238 accctcctggagtccttgtcacctgtcctctaaggccatggctctcaagtggatggttgc 179

                                                                       
Query: 181 ttttgtattcccagcggacacttagcagcatctagaacccgtttctcttgtcacaaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttttgtattcccagcggacacttagcagcatctagaacccgtttctcttgtcacaaatgg 119

                  
Query: 241 agagtgg 247
           |||||||
Sbjct: 118 agagtgg 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)