Query= MSMg01no392_a04.b1 MSMg01no392_a04.b1 CHROMAT_FILE:
MSMg01no392_a04.b1 PHD_FILE: MSMg01no392_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:24 2005
(558 letters)
>mm_chr11_85345866_85346822
Length = 957
Score = 994 bits (514), Expect = 0.0
Identities = 544/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 5 gaattctttccagtgttcattttagctgatctctacttgcttggcatatgtggatttgag 64
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctttccagggttcattttagctgatctctacttgtttggcatatgtggatttgag 264
Query: 65 cttataaatgaattacagcattcattgacatgatatcattagatattctgtattatggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttataaatgaattacagcattcattgacatgatatcattagatattctgtattatggtg 324
Query: 125 atactgactatccattttggactattgaatttgtatttctgtagtcatgtctatagccaa 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agactgactatccattttggactattgaatttgtatttctgtagtcatgtctatagccaa 384
Query: 185 attatttgttttactcaacatacaataccagtatttaattgtgttagaagtgggacaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatttgttttactcaacatacaataccagtatttaattgtgttagaagtgggacaagc 444
Query: 245 tgtatatttaaaatctgtattaaaataatatagagaaagccctgtcttggccccaaatag 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 tgtatatttaaaatctgtattaaaataatatagagaaagccctgtcttggtcccaaatag 504
Query: 305 tccttagttttcccccatgaaaaaaacagattaaattatctggccactgcactgacacac 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 tccttagttttcccccatgaaaaaaatagattaaattatctggccactgcactgacacac 564
Query: 365 tgctaatgtaaaagtgcttatagaagtcacttttcttagaactattatggttcccaggta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctaatgtaaaagtgcttatagaagtcacttttcttagaactattatggttcccaggta 624
Query: 425 ccagattgcactgtcacataggctctcagcctagttgacacagtgtttatgagtgaggca 484
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 625 ccagattgcactgtcacataggctcttagcctagttgacacggtgtttatgagtgaggca 684
Query: 485 ggcctgttgacagaagtacgctgagtttataacgttttaaggggaataaaagggggaaaa 544
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 ggcctgttgacagaagtaggctgagtttataacgttttaaggggaataaaaggggggaaa 744
Query: 545 aaaatcctgaaaac 558
||| ||||||||||
Sbjct: 745 aaa-tcctgaaaac 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_a04.g1 MSMg01no392_a04.g1 CHROMAT_FILE:
MSMg01no392_a04.g1 PHD_FILE: MSMg01no392_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:24 2005
(422 letters)
>mm_chr11_85485935_85486755
Length = 821
Score = 801 bits (414), Expect = 0.0
Identities = 420/422 (99%), Gaps = 1/422 (0%)
Strand = Plus / Minus
Query: 1 ctcttggatcctctctgcaggagcaaatgatggtttccacattacatggatcacaccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttggatcctctctgcaggagcaaatgatggtttccacattacatggatcacaccatt 562
Query: 61 attctgctggcagccaaaacaagttcagaacacacacacttcaatgggcttgtgagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctgctggcagccaaaacaagttcagaacacacacacttcaatgggcttgtgagtcaa 502
Query: 121 aaagtgggtgattaacactgggtggaacaatgacttttccctagtccaatttgtcactgg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aaagtgggtgattaacactgggtggaacaatgacttttccctagtccgatttgtcactgg 442
Query: 181 taggcacttgaaatgtagagaaaacattgcccctactgattttgacacagagttaaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggcacttgaaatgtagagaaaacattgcccctactgattttgacacagagttaaatga 382
Query: 241 atttatttatgttatataaagtttaaaaagaaagaacctataattttattggaactaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatttatgttatataaagtttaaaaagaaagaacctataattttattggaactaaaa 322
Query: 301 gacaactgaataatgatctataatttaaaaagctagcagtcctcttttgttcagtttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaactgaataatgatctataatttaaaaagctagcagtcctcttttgttcagtttggt 262
Query: 361 agatgacaaagagatttaagtaagaataataagtgccacgttttgctcagagttcaaaag 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 agatgacaaagagatttaagtaagaataataagtgcca-gttttgctcagagttcaaaag 203
Query: 421 gt 422
||
Sbjct: 202 gt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 821
Length adjustment: 9
Effective length of query: 413
Effective length of database: 812
Effective search space: 335356
Effective search space used: 335356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
