BAC Information

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BAC

Clone NameMSMg01-392B06
Chromosome11 (Build37)
Map Location 118,017,346 - 118,017,793
singlet/doubletsinglet
Overlap genenone
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B06.T7 (MSMg01no392_b06.b1)MSMg01-392B06.TJ (MSMg01no392_b06.g1)
ACCAG493699AG493700
length772776
length of high quality
(start - end)
444 (47 - 490)429 (73 - 501)
definitionCHROMAT_FILE: MSMg01no392_b06.b1 PHD_FILE: MSMg01no392_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:29 2005CHROMAT_FILE: MSMg01no392_b06.g1 PHD_FILE: MSMg01no392_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAGGTTACACAATCTCAGAAACTATCTGCAGTTGGCAAAACC
ATGCCTCTACTAGAGCATGAGGCAAATCACAATCAGCTGCTGTGGACAGT
TTGAGCAGCCCACATTCCACACCTGGGATTAAATCAACACCACATTCTTA
TAGTATTGCCAGTATGCTGATGTGGTAGCAGGCACTCTGTAGATGGCGGG
TGGTGGTGATGAGCCCACTGTGGAAACTACAAGCTGTATCATGCTACAGT
GAGGATGGGCTTTAGGGTCAAAAGCAAAGTCAAGGTTACAGTGGTGGGAC
CAGGAACATGAGGGTGAGAGAAGAGCTTGGCATGAGACAGACAGACAGAC
AGACTGACAAAGAGGAGAAAGAACCAGTGTTGGCAGGGCCCTGAAGCCCT
GAAACACCAACATGACTAGCACACTGTTGCCCTGCTATACATCCTTGCTT
CTAATGTACCCAAGTGTACCAAACTAACAGAAGATGGTTTCTGAGAACCC
CAGCACGACGGGTTAAACAAGGGCCACAGCATCCCAGAGGCACCCCTGTG
CTCTCGAGGGAAAAGACACCTCTCACTAATTTGAGATGGAGGAAGGAAAG
CAAAACTACTGTACCGGTGAACCCCCATGCCTCTTACGTTTAGAATATTT
TGTTGCTTAGGTAAGGCCTGGAACCCCGAACAACCCACTTACGCCCGCAA
ACTTCACCCACCAAACCAAAAG
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTTGATGAAAATTAATAACTGCCACC
TGCCTTGTTGGAGGCTAGGTTTTACATCTGCTGTAGTCAGGCTGAAGGGC
GTTGCTGACCTGCTTGAGAAGCAAAGGTGGGACAGTGAAAAGCAACAGTA
TAAAAGCTTCTTTGTGGAAGCCCAGGTACGTTATTCAGTTGCAAATTAGC
AACAATCAAGCTCAGGCTCTGGCCTCCCTGTGTGGGGGAGCTGGCTTTAA
GAAATAGCAGAAAGGCCAGAGATTCTCTGGAAGTAGAGGCTGTGCTCCAA
ATTAACTTTGCTAGGTAATTAAGATTTTTAGCTATCTTCAATAGGAATCT
CTAATATTGGACTTATTACTAGACCAGTCCAAGATTGAGTTGGAATAACT
GGTCACATTGAGGGAAAAAGAAGAATCATTATAATTCTTTCTTATGACTA
ATCTTTTTAAGTCAGATTCCACAGCCTTTGATGTTCTTTTTTACCCTAAG
GTTAAAAGCTTGAAGCAAGGCCGCTTCCCTTGTCCCAACCTGGAAAAAGG
CCACGCAGGAAGGGTGGGAAACATGGTCCCCATTCCCCTTCCTAATCCCT
AACAGCCCGGCCCTGGAGCGACTTCTCCTGATTCGCTCCCAAAAAAAACA
CCCCGCTTTTTGTGCTTTTTTGGGGAGAAAAACAAGCTTTCTCCCCCCCC
ACAAAGGACTCGTGTTTTATCCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b06.b1 MSMg01no392_b06.b1 CHROMAT_FILE:
MSMg01no392_b06.b1 PHD_FILE: MSMg01no392_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:29 2005
         (444 letters)



>mm_chr11_118017142_118017985
          Length = 844

 Score =  785 bits (406), Expect = 0.0
 Identities = 434/448 (96%), Gaps = 8/448 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaggttacacaatctcagaaactatctgcagttggcaaaaccatgcctctac 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagggcacacaatctcagaaactatctgcagttggcaaaaccatgcctctac 264

                                                                       
Query: 65  tagagcatgaggcaaatcacaatcagctgctgtggacagtttgagcagcccacattccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagcatgaggcaaatcacaatcagctgctgtggacagtttgagcagcccacattccac 324

                                                                       
Query: 125 acctgggattaaatcaacaccacattcttatagtattgccagtatgctgatgtggtagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctgggattaaatcaacaccacattcttatagtattgccagtatgctgatgtggtagca 384

                                                                       
Query: 185 ggcactctgtagatggcgggtggtggtgatgagcccactgtggaaactacaagctgtatc 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcactctgtagatggggggtggtggtgatgagcccactgtggaaactacaagctgtatc 444

                                                                       
Query: 245 atgctacagtgaggatgggctttagggtcaaaagcaaagtcaaggttacagtggtgggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 atgctacagtgaggatgggctttagggtcaaaagcaaagtcaaggttacagtgatgggac 504

                                                                       
Query: 305 caggaacatgagggtgagagaagagcttggcatgagacagacagacagacagactgacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggaacatgagggtgagagaagagcttggcatgagacagacagacagacagactgacaa 564

                                                                       
Query: 365 agaggagaaagaaccagtgttggcagg--------gccctgaagccctgaaacaccaaca 416
           |||||||||||||||||||||||||||        |||||||||||||| ||||||||||
Sbjct: 565 agaggagaaagaaccagtgttggcaggttggcagggccctgaagccctggaacaccaaca 624

                                       
Query: 417 tgactagcacactgttgccctgctatac 444
           ||| ||||||||||||||||||||||||
Sbjct: 625 tgagtagcacactgttgccctgctatac 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)