Query= MSMg01no393_p02.b1 MSMg01no393_p02.b1 CHROMAT_FILE:
MSMg01no393_p02.b1 PHD_FILE: MSMg01no393_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:07 2005
(488 letters)
>mm_chr11_119771622_119772509
Length = 888
Score = 928 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Plus
Query: 1 ggatcctggtttggggtgtaacacagtggtagagcacttgcctaacacagagaccctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatcctggtttggggtgtaacacagtggtagagcacttgcctaacacagagaccctggg 260
Query: 61 tcctgtccctagcaccggaggacgttgatggaaagacaggaaccctgaactctggagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgtccctagcaccggaggacgttgatggaaagacaggaaccctgaactctggagagg 320
Query: 121 actggacttatgacattggacctcccaaatcacatgacccctctccaaccagaggggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggacttatgacattggacctcccaaatcacatgacccctctccaaccagaggggctt 380
Query: 181 ggccaagagagctggagacccatgttagggatctttttatgaccctgcatgtggcaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccaagagagctggagacccatgttagggatctttttatgaccctgcatgtggcaggtt 440
Query: 241 cagaggagtccgccttgaggacctccatggccaccttttgttgacatgaggcctatagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaggagtccgccttgaggacctccatggccaccttttgttgacatgaggcctatagtt 500
Query: 301 aaatcctaggggtcaggcacatgtgacatggcagatggctcggaatgggcattgggacag 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aaatcctaggggtcaggcacatgtgacatggcagatggctcggaatgggtattgggacag 560
Query: 361 ttcctctaaaggactaaagcaagatggctgtcatggcaccggcacgcagaatctcagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctctaaaggactaaagcaagatggctgtcatggcaccggcacgcagaatctcagcaa 620
Query: 421 tcagaagcctgcaggtagagggtcgagagtttaaggcctgcctgacataaaaaggaacaa 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tcagaagcctgcaggtagagggtcgagagtttaaggcctgcctgaaataaaaaggaacaa 680
Query: 481 acacaaaa 488
||||||||
Sbjct: 681 acacaaaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_p02.g1 MSMg01no393_p02.g1 CHROMAT_FILE:
MSMg01no393_p02.g1 PHD_FILE: MSMg01no393_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:07 2005
(339 letters)
>mm_chr11_119948072_119948810
Length = 739
Score = 491 bits (254), Expect = e-143
Identities = 310/360 (86%), Gaps = 49/360 (13%)
Strand = Plus / Minus
Query: 29 cgaggacagcctgggctacgtggtatatgagatgctttcttagtgcaaaagtggctgagg 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgaggacagcctgggctacgtggtatatgagatgctttcttagtgcaaaagtggctgagg 680
Query: 89 ttcaatggcagagtccttatttagcacatgcaaggccctggaccaccatcctaactt--- 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcaatggcagagtccttatttagcacatgcaaggccctggaccaccatcctaacttacc 620
Query: 146 --------------acacacacacacacacacacacacacacacg--------------- 176
|||||||||||||||||||||||||||||||
Sbjct: 619 acacacacacacacacacacacacacacacacacacacacacacgcacgcacgcacacac 560
Query: 177 -----------------cacgcgcttgttcataagattaatatgcggataatttttaaag 219
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcactcacacgcacgcacacgcgcttgttcataagattaatatgcggataatttttaaag 500
Query: 220 catttgagtttataacattgttatttaatgtatcttctgttggagaggccatctgagctt 279
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 catttgagtttataacattgttatttaatgtaacttctgttggagaggccatctgagctt 440
Query: 280 gtgggtcccgagccctttggcagacaggaaagaccacatctatacacttggagactccga 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgggtcccgagccctttggcagacaggaaagaccacatctatacacttggagactccga 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
