BAC Information

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BAC

Clone NameMSMg01-394D10
Chromosome11 (Build37)
Map Location 56,225,014 - 56,386,824
singlet/doubletdoublet
Overlap geneLOC624168
Upstream geneSparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394D10.T7 (MSMg01no394_d10.b1)MSMg01-394D10.TJ (MSMg01no394_d10.g1)
ACCAG495323AG495324
length762833
length of high quality
(start - end)		518 (49 - 566)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no394_d10.b1 PHD_FILE: MSMg01no394_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:31 2005CHROMAT_FILE: MSMg01no394_d10.g1 PHD_FILE: MSMg01no394_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,225,014 - 56,225,527)(56,386,585 - 56,386,824)
sequence
TTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCATATTCCTGTAAATAAGCATGGTTTTTGATCTTAGGATG
TATTTCTTTGGTTCTAGACAGCACAAAATCCAGAATATAAGCTACTTTTG
TTAGGAAACATCTCCTAGATATAAGCTGATGAGTTCCTTCAAACAAGTTT
TAGTCAATTCTGCTGGCTAAATAATCCCATAGCTGGTAGATTTAGAAACA
TAGTTGATAGATGTAGGAACTGTCATTTATCCTGGGTCAAATGCACATAG
GAGGGGCTACTTGGTTGTTTTATGCTGTGTCCTCTGACAATGTAGTCAGT
GTTTTCTGCCCAAGTCACTGAGGAATAGCAGTGAAATCAAGCTGATGGCA
CATGTGACAGCTCCCTGTGCTTCACCCAGTATGAGACCCTTTCTGGGACC
CTCTTGTCTTTTCTAGAGCTCATACAAAGGTTGGAAAGTTCAGTAAAATT
CTTTCCATACCACCGAGCAAGATCCATATCTATATTTCCAAAAATAAGAC
ACTAGAAATGGAGTCCCGAAGACATTTGCTGGACAGAAGACTTCTGTCCC
TTCTTAAAAGTTACCTAGTTGATTGCCATTCTGAGAAGAGCAGTAACCAA
GTCAGAAGATCCAGCCTCAGATCAGATATCAGCTTTAGATGATGTCCTCT
CAGAATCAGACAATTATTAAGGCTCCTTTTCCCCCTGGGACTTAAATATA
ACCGGACCCTAG

TCCTCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGCACATAAATATGTA
ATATGTATTGAATGCGGACTGGGTGCTAGACACCAGGCCTTTGGCAACAG
CTAAGCACGCGGATGAGCACAGAGCGTGGCAGAAGCAACTGCTGAGAGCA
GGAGACAGAAGTTCAGTACAACAAGCATCTGTGTGTCTTTAATGAGGTTG
TCATGAAAGCATGCTCCTGGGGACATATGACCCTTGAAGTGGCGGGGGAG
TTCTAGGGGAGGCTTCTGGGAGGTGTTTTTTCCCCCCCCTCCTCCATTTC
TTTTTTATCCCCGATCACTTTCCCCTCTCCCCCTACTCTCTCTTCCCTCT
CCTTTTCTTCTTTCTCTTTCCTTTTCCCCCCCCACTTCCTGTCTTCTTTT
TCCCCTCTCCTTCCCCCCTCCCTTTTTTTTTTCCTTCTCTCCCTCCTTTC
CCTCTCCCTCTTCCCTCTCTCTTCTCTTCCTTTCCTTCCTTTCCCTTCCC
CTTCTCTTTCTCCTTTTTTCCTTCCCCCCCCCCCTCTTCTCTCGCTTCTC
CCTTTTTCGCCTCTTTTTCCTTCTATTCCCCTTTCCTTTCCTACTCTTCT
CCCCTCCCTTCTTTTTCTTTCCCTCTCCCTCCTCATTTTCTTCCCTCGTC
CCGTGTATAACTTACCAATCTCCCTCCCTCCCCCCCACCCATATTTCTAC
TTCATTCTCTCATCCTCACTACCGCCTTTCTCCTTATCCCCGCCAGCTTC
TCTTCTTTTCCCCTCTCCCGCTATTTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_d10.b1 MSMg01no394_d10.b1 CHROMAT_FILE:
MSMg01no394_d10.b1 PHD_FILE: MSMg01no394_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:31 2005
         (518 letters)



>mm_chr11_56224810_56225727
          Length = 918

 Score =  917 bits (474), Expect = 0.0
 Identities = 504/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcatattcctgtaaataagcatggtttttgatcttaggatgtatttctttggt 64
           |||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcagcatatggatgtaaataagcatggtttttgatcttaggatttatttctttggt 264

                                                                       
Query: 65  tctagacagcacaaaatccagaatataagctacttttgttaggaaacatctcctagatat 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 tctagacagcacaaaatccagaatataagctacttttgttaggaagcatctcctagatat 324

                                                                       
Query: 125 aagctgatgagttccttcaaacaagttttagtcaattctgctggctaaataatcccatag 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagctgatgagtcccttcaaacaagttttagtcaattctgctggctaaataatcccatag 384

                                                                       
Query: 185 ctggtagatttagaaacatagttgatagatgtaggaactgtcatttatcctgggtcaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggtagatttagaaacatagttgatagatgtaggaactgtcatttatcctgggtcaaat 444

                                                                       
Query: 245 gcacataggaggggctacttggttgttttatgctgtgtcctctgacaatgtagtcagtgt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gcacataggaggggctacttggttgttttatgcagtgtcctctgacaatgtagtcagtgt 504

                                                                       
Query: 305 tttctgcccaagtcactgaggaatagcagtgaaatcaagctgatggcacatgtgacagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctgcccaagtcactgaggaatagcagtgaaatcaagctgatggcacatgtgacagct 564

                                                                       
Query: 365 ccctgtgcttcacccagtatgagaccctttctgggaccctcttgtcttttctagagctca 424
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 ccctgtgcttcacccagtatgagaccctttctgggaccctcttgccttttctagagctca 624

                                                                       
Query: 425 tacaaaggttggaaagttcagtaaaattctttccataccaccgagcaagatccatatcta 484
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 tacaaaggttggaaagttcagtaaaattcttgccataccaccgagcaagatccatatcta 684

                                             
Query: 485 tatttccaaaaataagacactagaaatggagtcc 518
           |||||| |||||||||||||||||||||||||||
Sbjct: 685 tatttctaaaaataagacactagaaatggagtcc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_d10.g1 MSMg01no394_d10.g1 CHROMAT_FILE:
MSMg01no394_d10.g1 PHD_FILE: MSMg01no394_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:31 2005
         (240 letters)



>mm_chr11_56386385_56387024
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcagcacataaatatgtaatatgtattgaatgcggactgggtgctagacaccaggcc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 atttcagcacataaatatgtaatatgtattgaatgtggactgggtgctagacaccaggcc 381

                                                                       
Query: 61  tttggcaacagctaagcacgcggatgagcacagagcgtggcagaagcaactgctgagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttggcaacagctaagcacgcggatgagcacagagcgtggcagaagcaactgctgagagc 321

                                                                       
Query: 121 aggagacagaagttcagtacaacaagcatctgtgtgtctttaatgaggttgtcatgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggagacagaagttcagtacaacaagcatctgtgtgtctttaatgaggttgtcatgaaag 261

                                                                       
Query: 181 catgctcctggggacatatgacccttgaagtggcgggggagttctaggggaggcttctgg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 catgctcctggggacatatgacccttgaagtggtgggggagttctaggggaggcttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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