BAC Information

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BAC

Clone NameMSMg01-396M05
Chromosome11 (Build37)
Map Location 56,603,108 - 56,603,283
singlet/doubletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M05.T7 (MSMg01no396_m05.b1)MSMg01-396M05.TJ (MSMg01no396_m05.g1)
ACCAG497261AG497262
length724728
length of high quality
(start - end)
176 (65 - 240)554 (67 - 620)
definitionCHROMAT_FILE: MSMg01no396_m05.b1 PHD_FILE: MSMg01no396_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:58 2005CHROMAT_FILE: MSMg01no396_m05.g1 PHD_FILE: MSMg01no396_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TAAATTACAAATCAAAACACATTTATTCCCTAAGGAAATGCAGATGATAT
TACTGTGTGTCAGCTTAGTCACCTATATATGAATTCTTTACATATGGCTC
TGCATCCTTATACATGGCTACAAGCATCTATTGAAATCCTGTAGATATGG
ATCTAGAATGTATTGCAGGGTCACACTAACTCAAAGGATAAGTTTTCAGC
CTCAGACTCACAGAACAGAAACTGGGAATGTGCTTTGTAGCCGAGAGATT
TGCTGCTGTCATTAGTTTAGCTGNTGNCTAGTTCCCCCTTTTAATTTGGC
TATGTCAGCGCACGCAAAATTAAATAGAACTCCAGAAATAGCTGCTAGCT
GAGGGTTGTGAATAGGTTCCTGATTGGATTGGGGTCCATGCCTGGACTAG
TCTACTGAGAAAGTAGAATGGAAGCTGAGGCTAAGGACTGAATGGCAAAG
GTAGCTGCTGACTGCATGCTCCCTCTACTCTACATCTACCGATTAAGCTC
TGCTTTGCTCATGTTTTCATACGCCAGAATTCAGACCACTTGGGAGTCCA
TTGCTAGCTGTTCGGAAATCAATTGTATCTTCAAACCCAATATTTTTTTT
TTTTGAATATTAACATCGGCCTTCCTCCTCCTTGCAAAAACCCCCCGGTT
ACTGTTTTACTTTTTTTCGCCCTC
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCTTTCGAACAGCAATGGCTTGTGCTGTAA
GATAGAGAATTGACCAATGGGACCTCATAAAACTGCAAAGCTTCTGTAAG
GCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAAGAGATTTGGAAAG
GATCTTTATCTATCCTAAATCAGATAGGGCACTAATATCTAATATATATA
AAGAACTCAAAAAGGTGCACTCCAGAAAAATCAAATAACCCCATTAAAAA
ATGGGGCTCATAGGTTAACTAAGAATTCTCACCTGAGGAATACCAAATGG
CTGATAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTTACAACAGGCAGAATGGCTAA
GGTAAAAAATTCATGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGTAGTTCCTCAGAATATTGGACATAGAACTACCGGAGGA
TCCCGCAATACCTCTCCTGGACATATATCCAGAAGATGTTCCAACTGGTA
ATAAAGACACATGCTCCACTATGTTCACAGTAGCCTTTATTATAATAGCC
CGAAGGTGGAAAGATACCCTATGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m05.b1 MSMg01no396_m05.b1 CHROMAT_FILE:
MSMg01no396_m05.b1 PHD_FILE: MSMg01no396_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:58 2005
         (176 letters)



>mm_chr11_56602908_56603483
          Length = 576

 Score =  340 bits (176), Expect = 2e-98
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacacatttattccctaaggaaatgcagatgatattactgtgtgtcagcttagtcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacacatttattccctaaggaaatgcagatgatattactgtgtgtcagcttagtcacct 260

                                                                       
Query: 61  atatatgaattctttacatatggctctgcatccttatacatggctacaagcatctattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatatgaattctttacatatggctctgcatccttatacatggctacaagcatctattga 320

                                                                   
Query: 121 aatcctgtagatatggatctagaatgtattgcagggtcacactaactcaaaggata 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcctgtagatatggatctagaatgtattgcagggtcacactaactcaaaggata 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)