BAC Information

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BAC

Clone NameMSMg01-397B19
Chromosome11 (Build37)
Map Location 115,893,119 - 115,893,489
singlet/doubletsinglet
Overlap geneUnk
Upstream geneLOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b
Downstream geneUnc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B19.T7 (MSMg01no397_b19.b1)MSMg01-397B19.TJ (MSMg01no397_b19.g1)
ACCAG497528AG497529
length815766
length of high quality
(start - end)		394 (41 - 434)371 (68 - 438)
definitionCHROMAT_FILE: MSMg01no397_b19.b1 PHD_FILE: MSMg01no397_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:25 2005CHROMAT_FILE: MSMg01no397_b19.g1 PHD_FILE: MSMg01no397_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATTCAC
TCTGTATACCAGGCTGGCCTCAAACTCATAGAGATCTGGCTGCTTCTGCA
CCACTACTGTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTT
CTTTCTTTCTTTCTTTCTCTCTCCCTCTCTCTCTCTTTCTTTCTTTCTTT
TTTCCTCCTCCTCCTCTTCTTCCTCCTCTTCTTCCTCCTCTTCCTCCTCT
TCCTCCTCCTCCTCCTCCTCCTCTCCCTCCTCCCCCCCCTCCTCTTCCTT
TTAGATTCTAAGTAAATCACAATGCATACCCACGGTTCAGAATGATTGGA
TAAGCAGTAGTTTCCAGAGGCTGGTCCCTGGAAGCTTGAGTGGTGCCCCA
GGGCTTCAGGGTCTCACTGGACAGTTGAATCCAGCAGATCTGTGGGCTAA
TGACACCAGAGCTACAGTGGAAGGAGACACTGGGCCCAAGAAAGAACTCT
AGGGGCCTTCAAACAGAAGGGCTAAAAAAGGGAGGGATCCCTGAAAACCC
TGGTTGGTTATGTTGGGTTGGCTGAATGTGGGGGTGGGGAACACCGGCGG
AGGGGGAAAGAAATTTTCCCACGCCTCGTGGGAACCGGGATCTCTCTTGG
GGGGAAGGTTGAAAATAAAAACATGGGGGGGGAGAGAGAGAAGAAGAAAT
TCGGGCCTCGCCCTTCTTGTGGGCTGGGGAAAACTACCAAGAGAGAACAT
TAGTATTGAACTTCC

ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTTGGCTAAGCCTGGCCACTGCTCTGTGCTCT
CACAGTCAGGACCTTGTGTTGTAGGGTTAAACTGAACCCAGGCCTCTTAC
ATGTTGGGATCACATCTGTCATTGGGTTGCGTCTTCGCCACGCACCCCCA
GTTGTTTATTTACTCTTTACTTTTTAAGCTAGGATTTCACCAAGTTGTTT
GTGCTGGCCTTGACTTGCTTTAATCCAGACAGAACTTGAACTCTGCATCC
TCCTGCCTCAGATTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTTCTTTT
TTTGGTTTTTCGAGACAGGGTTTCTCTTTATAGTCCTGGCTGTCCTGGAA
CTCACTTTGTAGATAAGGCTGGCTTCGAACTCAGCGTTCCTCCTGCCTCT
GTCCTCCAAGTGCTAGGATTAAAAGCATGTGCTACCCCGCCCGGGGGTTT
TTTTTTAAAGATAATTTATTTAGTGAACCGCGGTTTTCCTTGCTGTACCC
CGTTGGGCCAAAATAGTTCCCCCATTTCCTTAATAAGGTTTGTCATCAAC
CTGTTGCTCATCCTATTAACCTCCCAAATCACTTTCCTCATCTAACTTTT
TCTTTCCGTTGTTTCATATTTTAATGCCCTTACCTTCACCTTCCTTTTCA
ACCTTTGCTTTTATCCCAAGTTCCCCCCCTTTTCTTCTCCTTTTTTATTT
TTCCTTATCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b19.g1 MSMg01no397_b19.g1 CHROMAT_FILE:
MSMg01no397_b19.g1 PHD_FILE: MSMg01no397_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:25 2005
         (371 letters)



>mm_chr11_115892919_115893689
          Length = 771

 Score =  717 bits (371), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttggctaagcctggccactgctctgtgctctcacagtcaggaccttgtgttgtagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttggctaagcctggccactgctctgtgctctcacagtcaggaccttgtgttgtagggt 260

                                                                       
Query: 61  taaactgaacccaggcctcttacatgttgggatcacatctgtcattgggttgcgtcttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactgaacccaggcctcttacatgttgggatcacatctgtcattgggttgcgtcttcg 320

                                                                       
Query: 121 ccacgcacccccagttgtttatttactctttactttttaagctaggatttcaccaagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacgcacccccagttgtttatttactctttactttttaagctaggatttcaccaagttg 380

                                                                       
Query: 181 tttgtgctggccttgacttgctttaatccagacagaacttgaactctgcatcctcctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtgctggccttgacttgctttaatccagacagaacttgaactctgcatcctcctgcc 440

                                                                       
Query: 241 tcagatttcttttcttttctttcctttcctttccttttctttttttggtttttcgagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatttcttttcttttctttcctttcctttccttttctttttttggtttttcgagaca 500

                                                                       
Query: 301 gggtttctctttatagtcctggctgtcctggaactcactttgtagataaggctggcttcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtttctctttatagtcctggctgtcctggaactcactttgtagataaggctggcttcg 560

                      
Query: 361 aactcagcgtt 371
           |||||||||||
Sbjct: 561 aactcagcgtt 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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