BAC Information

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BAC

Clone NameMSMg01-399E11
Chromosome11 (Build37)
Map Location 110,946,093 - 110,946,460
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E11.T7 (MSMg01no399_e11.b1)MSMg01-399E11.TJ (MSMg01no399_e11.g1)
ACCAG499180AG499181
length721734
length of high quality
(start - end)
376 (49 - 424)62 (168 - 229)
definitionCHROMAT_FILE: MSMg01no399_e11.b1 PHD_FILE: MSMg01no399_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:15 2005CHROMAT_FILE: MSMg01no399_e11.g1 PHD_FILE: MSMg01no399_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCC
GCGGAATTCTCTATGTACCTGAGGATAACTTTAAACTTCTGATCTTCTGT
TTCTACTGCCTAAGTGGATGTTGAGACTACAGGCATGTCCCACCATGGCT
GGTAGATACAGTGCAGGGACTTGAACCCAGGACTCTGCATGCCATACTTG
CACTCCACCAATTGAACTGTGTGTCTCAGCTTCCGTCTCTGATGTACAAG
TTTTTAAAAGTCAATTATCCCTTTACAGTGGTTTTGCACAAACTCGTGGA
TGCGCACTTTTTGTGACTTCCATAAAGTTAGGTGCTCTTCCTGTAATTAC
AGCAGCCAGATGATATGTTTGTTTCGATTCCCAAGTCTCTTTATTCCCCT
CTTTCAGAAAACGTTACAACCCCAAATCACATCTGACTGCAGAGAAATCT
CAAGTTAATCTTATTTATTTATCTTAATTGGAGGATTCCACACACCATGT
CTGCGTTCATCATTTCATGCCTCCCTCTCCCCTGTATCTCCTCACATGTC
CTCCCACTCCCTCTCATGTCCATGTGGCCCCTTTCTATAATTATTATCGT
CACATATATGTACCACCCACAGATTCCATCTACCGTCGTTCGAATGGCAA
ATCAACTTTGTCTCTTCTATAGACCCATTGCGCTTCCCTTTCAAAAGCCC
ACCTACAGTCCCTCTGCTTTG
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGTGTCGATATAATTACATGG
AGAGACAGCAATAATCATTTTCTGGCAATCCCTGCATGAGTTAGAGCAAG
CATAAAAGAACACATGAACCCAAGTAGAGAGAAATATAATATCATGATAC
TGTTATCAAGGTTTGTAGCTGACGCAAGGTACAAAAGAGAACATTCTAAA
AACAGAGGAGAAACTGGAGCGGATGTGTTTGTAAAAATGAAAGAAACAAA
GCACTTTATTTCATTTTTACCAATTACTTTATCTATTTACACTTCAAATG
TTACCCTCTTCCCAGCCCCTCCTCCTTTATCCCCCTACCCCAAGTGTGGA
TGCTTCAATCTTACTTATTAAAAAATGCACTTTATTAACGTAATGTTTTA
TTGGTCTCCTAAAGGAAAGTATGGCTAATATCACCTGTTAAGTACTTGCT
CTAAGTTTTGCTTTGCCTATGCCTTCTGCTTTTTTAATTGACCNNNNNCC
NNNNNNNTTGGNNNTTNNCCTTTCGTAATTTTTNNNNNCCTCTTTNNNTN
TTNNNTTCACATAATATTTTTTTTTCTTTTCCCCTTCCTCCCTTCGCCCC
CTCTCTTTGGGTTCCCCCTATTTTTTTTTCCTTTTTTNNCCTTNCCCCTC
CCCTCTTTTCCCCTTTTTTCCCTCATCCCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e11.b1 MSMg01no399_e11.b1 CHROMAT_FILE:
MSMg01no399_e11.b1 PHD_FILE: MSMg01no399_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:15 2005
         (376 letters)



>mm_chr11_110945888_110946663
          Length = 776

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctatgtacctgaggataactttaaacttctgatcttctgtttctactgcctaa 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctatgtagctgaggataactttaaacttctgatcttctgtttctactgcctaa 265

                                                                       
Query: 66  gtggatgttgagactacaggcatgtcccaccatggctggtagatacagtgcagggacttg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtggatgttgagactacaggcatgtcccaccatggctggtagatacagtgcagggacttg 325

                                                                       
Query: 126 aacccaggactctgcatgccatacttgcactccaccaattgaactgtgtgtctcagcttc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aacccaggactctgcatgccatacttgcactccaccaattgaactgtgtgtctcagcttc 385

                                                                       
Query: 186 cgtctctgatgtacaagtttttaaaagtcaattatccctttacagtggttttgcacaaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgtctctgatgtacaagtttttaaaagtcaattatccctttacagtggttttgcacaaac 445

                                                                       
Query: 246 tcgtggatgcgcactttttgtgacttccataaagttaggtgctcttcctgtaattacagc 305
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcgtggatgcgtactttttgtgacttccataaagttaggtgctcttcctgtaattacagc 505

                                                                       
Query: 306 agccagatgatatgtttgtttcgattcccaagtctctttattcccctctttcagaaaacg 365
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agccagatgacatgtttgtttcgattcccaagtctctttattcccctctttcagaaaacg 565

                   
Query: 366 ttacaacc 373
           ||||||||
Sbjct: 566 ttacaacc 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)