BAC Information

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BAC

Clone NameMSMg01-399F09
Chromosome11 (Build37)
Map Location 55,896,469 - 55,896,736
singlet/doubletsinglet
Overlap genenone
Upstream geneGm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1, Nmur2
Downstream geneLOC100040816, LOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F09.T7 (MSMg01no399_f09.b1)MSMg01-399F09.TJ (MSMg01no399_f09.g1)
ACCAG499223AG499224
length737804
length of high quality
(start - end)
244 (71 - 314)268 (78 - 345)
definitionCHROMAT_FILE: MSMg01no399_f09.b1 PHD_FILE: MSMg01no399_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005CHROMAT_FILE: MSMg01no399_f09.g1 PHD_FILE: MSMg01no399_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTACGGATCCGCGG
AATTCTTTGTTTACATCTGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGGGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATTGGTAAAGATCCTTTCCCATTCTGTTGGTGGCCTTT
TTGTCTTATTGAAGGTGTCTTTTGCCTAACAGAAGCTTTGCATTTTTATA
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAGCCATTGCTATTCTA
TTTGGGAATTTTTCTTTTGTGCCCATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATTAGTTTCAGTGTCTCTGGGTTTTATATGGTAGTCTCCCCCG
GTTTTTTGCCCCCCCAATCGACTTAGAAAGGAAAGGATGTACAGTTGGCT
TCTTCTAATGATAGCCGCTAGTTGTGTCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCATTGGAGGGTTTTAGTTCCCTTGCCAAAGATCGAGTGTA
CCTAGGTGTGTGTCTTCGTTTCTGGGCCTTCAGTTCCATTCTGTTTGTTT
TACTGCCTGTCTCCTCCCATTATCTTGCCCTTTTTTTCACTTTGCTTTGT
TGTACATCCCTATGTGATGGTGGTGTCTTTCCCCCACCGTTTTTTCTTTT
TTTCCCGCCCCCCCCCCCTCCCTCCTTTTTTTTCCCG
NCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCATGTCTTGTCAGTGGG
CCCTGCGTGACCTAGAGATGCTGCTGAGTATTTAATACTCAACTACCCCA
CATCCAGCTTCCAGGCATCTACCTCCAGGACAAGAAGGCTCCATCAAAGG
TCCTGTTAAGCCCTTGGATCACCCAAGCTGGTTGGTCTCTTCCCATCTTC
CCTACACTGACAGAAGATGTTGCCAATCAATCAACATCAACATGAAACAG
CCTTAGGTGAGGTAATCCCTCTTCCTCCAAGGCTCCCAGGTGTTCAAACA
GCCATAGTGTAAAGTCGGTGTGTGCTTCCAGATACTAGGCAATTCTTATT
CTTATTTTTTTTTCTCACCCAACAACAACATTGTATTGATAGTTTGCCCT
CGTCCTTGTCCTCGTTATGTACTTGTATCTATCTTCAGATTTACCCTTTC
TACCCTAATTTCGAATGGTTACTCCTTGTTTATTTATAAGGGCTCTTCAT
GCCTCTTTTATTTGTAACCAATTCTTCTCGAATTACCCCGTTTTTGTTCC
TATGCCCCCCTTGTCCCCCTTCTTCTTCCTTCTTTCTTTGCTTCTTACGA
TATGCATGTTTTACGCCCTCGTGCTGGTCCTCTTATATCTTTCTATCATC
CTTCTAACCTTCACTGGTTTCTCTTTTCCTTTACCCTCTCTTCCCATTCT
TACCCGTTCTACTATCCTCCACTTTCCTACCTTCACTTCCTCCTTTCTTC
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f09.g1 MSMg01no399_f09.g1 CHROMAT_FILE:
MSMg01no399_f09.g1 PHD_FILE: MSMg01no399_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:19 2005
         (268 letters)



>mm_chr11_55896269_55896936
          Length = 668

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcccatgtcttgtcagtgggccctgcgtgacctagagatgctgctgagtatttaata 60
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 468 aattcccatgtcttgtcagtgggccctgcatgacctagcgatgctgctgagtatttaata 409

                                                                       
Query: 61  ctcaactaccccacatccagcttccaggcatctacctccaggacaagaaggctccatcaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctcagctaccccacatccagcttccaggcatctacctccaggacaagaaggctccatcaa 349

                                                                       
Query: 121 aggtcctgttaagcccttggatcacccaagctggttggtctcttcccatcttccctacac 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agatcctgttaagcccttggatcacccaagctggttggtctcttcccatcttccctacac 289

                                                                       
Query: 181 tgacagaagatgttgccaatcaatcaacatcaacatgaaacagccttaggtgaggtaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgacagaagatgttgccaatcaatcaacatcaacatgaaacagccttaggtgaggtaatc 229

                                       
Query: 241 cctcttcctccaaggctcccaggtgttc 268
           || |||||||||||||||||||||||||
Sbjct: 228 ccacttcctccaaggctcccaggtgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)