BAC Information

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BAC

Clone NameMSMg01-399I20
Chromosome11 (Build37)
Map Location 119,694,223 - 119,694,399
singlet/doubletsinglet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I20.T7 (MSMg01no399_i20.b1)MSMg01-399I20.TJ (MSMg01no399_i20.g1)
ACCAG499388AG499389
length727761
length of high quality
(start - end)
177 (77 - 253)72 (94 - 165)
definitionCHROMAT_FILE: MSMg01no399_i20.b1 PHD_FILE: MSMg01no399_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005CHROMAT_FILE: MSMg01no399_i20.g1 PHD_FILE: MSMg01no399_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGTACCTGCGCGGA
ATTCTCAGGGACTTACANTACTAAGATTCAACTACATGTCACAGCCTCTG
GCTTTGGTCTAGGTTCATTTCCACGGCAGTGTTAGGTCACCTCGCAGCAT
CAGTCTTAATGAAGAATAGCAAGCCCACTTTCTGATTGAAAATCAAGGTG
GAAACAGTACAGGTCACTGTCAATATCCACACCATTGTCTATAAGATGCC
AAGATTTGGTACAGACTTACAGCTCAGACCCCAAAACCCAGGCACATGCG
TGTTGTGAGGCTATCACCATTGATGCGTAATCTACCTCCTGCATGTTCGT
GTCCTTTGTAAATTCTGCCCCCCCAGCTGATCTGTCTGCCCTGACTACAG
ACAAGCTCACACCTTCTGCACCCTTAAACACACAGAGTCACACAGTACAC
AGCTCCATTACTGGCATTTTTCAAGCGGCACTGTTTTTGTTTGTTTCTAA
GCTGCTGATTACCATGTATGGAAAAGCTGACATATTTGCCTCTTAGCGTC
CATTTGGACTACTTCCAGCTTCTTACTATTAGAATAGAGCTTGTTGTGGC
GACCTGCTCCTGTGCACCATTCCCTGATAAACTGAACACTGCACCTGTCC
CATTGTTTTTTTTTTTTTTTCAAGAGAGTCATTCCAGATATTACGATACA
AGCCTGTGTGACAAGTGTAAAACTCAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCGAAATTCTTTACAATTTTGCGCGAAGTAACGGGCTAGA
ACCGAACTTCCCTAGCTGACGTTCTGTGTCGACACTAAATGCTGCCTGGG
AGTTGCTTTAGTGACAGCACCAATGAATTGTAATTAAATACTAAGAACCT
ATAAACTATATTTGCACTATTAAATTAGCTAAAGCACTTTTCTCACCCTT
CATAAATTTACATAATAGTCATTAAACAAAATAATGAGCTAGTCTTTGAA
TGGAAGAGGCAAACAATTTTATTTTTGCCCCACCAGCTGTTCTGCCGATG
ACACTATTTTGTGGCTGCTCAATAAAACCCTGTGCTGTTGACATTATTCT
TCATGCCTGACTGCGCCGCCGCCCATTGCCCTATATTTGTTTTTACTAGG
TTAGGGATAGTTTCACAGATCCCCTATACTGGATCACTGTTTCTTCTCCC
CTCTCCCATTTTGCTCTTGTCGTGCTCCCCTCCTATCCTTTTGCTACTCC
CCCCCTCTTCTGACCCCCCCCGCCCCCTCTCCCCTATTCTTCTCCCTCCC
CCTTCTTCTTTCTTTAATTTTTTCCACCCTTTCCCTTCCTCTTCCCTCTC
GCCCCTCTTTCCACCTTCTTTTTTCTCTCTTTAATCCTTCCCCCCCTCTT
CCTCTCCACCCCCACTTTCCTTTTTTCCTCCCCTCCTCTTTCTTTTTTCA
CCCCCACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i20.b1 MSMg01no399_i20.b1 CHROMAT_FILE:
MSMg01no399_i20.b1 PHD_FILE: MSMg01no399_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:36 2005
         (177 letters)



>mm_chr11_119694023_119694599
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaactacatgtcacagcctctggctttggtctaggttcatttccacggcagtgttagg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 377 ttcaactacatgtcacagcctctggctttggtctaggttcagttccagggcagtgttagg 318

                                                                       
Query: 61  tcacctcgcagcatcagtcttaatgaagaatagcaagcccactttctgattgaaaatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcacctcgcagcatcagtcttaatgaagaatagcaagcccactttctgattgaaaatcaa 258

                                                                    
Query: 121 ggtggaaacagtacaggtcactgtcaatatccacaccattgtctataagatgccaag 177
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtggaaacagaacaggtcactgtcaatatccacaccattgtctataagatgccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)