BAC Information

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BAC

Clone NameMSMg01-399O08
Chromosome11 (Build37)
Map Location 37,068,572 - 37,068,927
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O08.T7 (MSMg01no399_o08.b1)MSMg01-399O08.TJ (MSMg01no399_o08.g1)
ACCAG499648AG499649
length711806
length of high quality
(start - end)
347 (72 - 418)43 (77 - 119)
definitionCHROMAT_FILE: MSMg01no399_o08.b1 PHD_FILE: MSMg01no399_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:01 2005CHROMAT_FILE: MSMg01no399_o08.g1 PHD_FILE: MSMg01no399_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAACCGCGG
AATTCCTTTCCTTTCACCCATGCTGAACAGCACACAATTACCGGTAACTC
CAGATCCAAGGGAATCTGTCTTCCTTTACTGGTCTCCTCAGGCACACTCC
AGACCATTATATACAGATACAGATACAACCAGACACACCCAGACCCCCCT
CCCCCCCACACACAGAAGAATAATAAATTGGAGAACTGTCCTTAAAATTA
TTCAATTACACATAATTTTATTTTAATTATATAGATTTGAAATACATATC
TTTCAAGGTATAAATAATGAATTTTTCTTTGGACAACATATTTTGAACCA
TTCTTTGTTAGATTATGGCCCGCGACGACAATATTCACTGTATGAGTTCC
CTTTAAAGACAGTGTGACCCCCCCATGTATACTATATATCACATCGACTT
ATCAATCACTGTTCTCTCCTAACATTAATGGGTAGACGCACCAACTACTG
ATTTGTGTTTCTAACTTTATTTGGTAACTTATCTTTAATCTTTATAAAAC
AAGCTAGCCATACCCATTCTGTGAATCAGACTTCGGGCAGTGGTTTTGTC
CCCTCTGGCCATCAATTTAGACCACGTTCTTATTTAATCATAAAAGATAA
GGCTGGTGTGTTGGGGATGTACAGCTGTGCCATTTCTCGAAACAGCTGGG
GTACACCTGTT
TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCCTTAAGTTGCTTTGGTC
AAAATATTTTATTATAGCAACAGGTAAGATAAAAGAATACTGCCGAAGAA
TCAAACTAACATCCTTATTTTCCCTTAGTCATATGTTTGACGTCTTTATC
TTTAGCTGCATAGTGCCTTTAGGTATACGTGTGAGCTTGAGGCCCACAAA
TTCCAGTTACCAAGCACCTTTGGCTGAGACTTGCTATATTCTATTCCGCT
CATGGCTATTACTTATGACTTTTTTTCTTACCACGCTTTACGTCATGTTC
CTATATCCCACACGATTGTTTGCTTTCCTACTCCTCTTACATTGTTCTTT
CATTCCATTTTACTCCCTAACTTGCCTCCCCCCTTCTTTTTTTTTTTCCG
TAAGCCCTCGACTCACTCCTATCCCTCTTGCCCCCTTTCCCTCACTAGAC
CTTCTTTTCCTTTTATCTCTCCCATCCTTTTTTTCGTCTTTATCCCTTCC
TCCCACCCCCCATATCCTTTTTTTTTCTATTCCCCCCCCTTCTTTCCTTA
CTTCTATCTCACCCCCTTTTCCTCTATCCTTCTTTAACCCCCCCCTGTAT
TTCTTTTTTTATTTTTTCCCCTCCCTTTTCCCTTCCCTCTTCCCCTCTCC
ATACTTTTTCTCCCCCTCTCTATTACTCTTCTCTTTACTTCCCCCCCCCT
TCTCTTTCCCCCCTTTTTTTTCTTCCCTCCCTTTCTTTCTTTTTTTCCCC
CTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o08.b1 MSMg01no399_o08.b1 CHROMAT_FILE:
MSMg01no399_o08.b1 PHD_FILE: MSMg01no399_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:01 2005
         (347 letters)



>mm_chr11_37068382_37069127
          Length = 746

 Score =  553 bits (286), Expect = e-162
 Identities = 335/360 (93%), Gaps = 17/360 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgaacagcacacaattaccggtaactccagatccaagggaatctgtcttcctttactg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gctgaacagcacacaattacctgtaactccagatccaagggaatctgtcttcctttactg 250

                                                                       
Query: 61  gtctcctcaggcacactccagaccattatatacagatacagatacaaccagacacaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtctcctcaggcacactccagaccattatatacagatacagatacaaccagacacaccca 310

                                                                       
Query: 121 gac-ccccctcccccc---------cacacacagaagaataataaattggagaactgtcc 170
           ||| ||||| ||||||         |||||||||||||||||||||||||||||||||| 
Sbjct: 311 gacaccccccccccccgcacacacacacacacagaagaataataaattggagaactgtct 370

                                                                       
Query: 171 ttaaaattattcaattacacataattttattttaattatatagatttgaaatacatatct 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttaaaattattcaattacacataattttattttaattatatagatttgaaatacatatct 430

                                                                       
Query: 231 ttcaaggtataaataatgaa---tttttctttggacaacatattttgaaccattctttgt 287
            |||||||||||||||||||   |    ||||||||||||||| ||||||||||||||||
Sbjct: 431 ctcaaggtataaataatgaaaact----ctttggacaacatatattgaaccattctttgt 486

                                                                       
Query: 288 tagattatggcccgcgacgacaatattcactgtatgagttccctttaaagacagtgtgac 347
           |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 487 tagattatggcccgtgacgacaatattcactgcaggagttccctttaaagacagtgtgac 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space:   249106
Effective search space used:   249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)