BAC Information

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BAC

Clone NameMSMg01-399P21
Chromosome11 (Build37)
Map Location 69,692,441 - 69,879,575
singlet/doubletdoublet
Overlap geneKctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1
Upstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576
Downstream geneAsgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P21.T7 (MSMg01no399_p21.b1)MSMg01-399P21.TJ (MSMg01no399_p21.g1)
ACCAG499720AG499721
length738779
length of high quality
(start - end)
239 (70 - 308)324 (76 - 399)
definitionCHROMAT_FILE: MSMg01no399_p21.b1 PHD_FILE: MSMg01no399_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:08 2005CHROMAT_FILE: MSMg01no399_p21.g1 PHD_FILE: MSMg01no399_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,879,339 - 69,879,575)(69,692,441 - 69,692,760)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGTACTCTGCGCGGAATT
AGTGATTACAAAAAACTTTCCCCGGACGCAGCTTGGCAGACTCAGTCTTG
AACACGCATTCAACCCTGTAACTGCCTGGTAGACGACAGCCCCATGAGAT
GCGGCAGCTAACCTGTGGATGCTTTCCATGCTCTGTTGCCTGCAGAGCCA
GAATTTTCAGGTCTGGAAATCAAAGGCTTCTCCCCTATTAAACTCTATAA
ACTCACTTGGGTTTGGATTCTGTTCTAGCAAAGTTAGAAGCCATAAATCC
AATGGTCTTAAATCCTATCCCGGGAAACCTAACTGGTCCAACTCAGAGGC
TATCTCACTCCCACGGCTGTGTCCGGGCAAAGAAACCTCAAGGGAAATTT
TGACTCCTCGCCCTTGCAGATCTGAACAAAAGCTAGGTTCTGACCTGAAT
CTGGACCTTCTGCCAAAATGTCTAGCAAAGTGCTAATTGGGGGAGTCTCC
AGGGGGTACCTGTTTTTAGATTTCAAGGTCAGAAAGAGTTAGTTATAGTA
TCCACTCATAGGCCTGTTTCTCTGCAACCTCTTGGTGTCTGCCGCCATCC
ACCTGCCTCTCTCTTCCCTCTTTCTTACTTTTCCTATTTTTTTTCTCTTT
TTCTTCCCCCTCTCCCCTCTCCTTCCCCCTCTCCTTCTTTCTCTTTTTTC
CCCCGCCCCCCCCCCCCCTCCTCCTTTCTTTTTTTCTC
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGGAGCTCTAGCCCCCGTGT
TGATGGAGGTTCTCCTTGCTCCCTATGTCACCCTAGGATGGAGTGTCCCA
CAATAGGTGGCTTGGAACATAGTAAAGAAACCTCCCAGAGAGTCCTGGCC
TCTTAATGGTTACTGTAGGATAAGATGTCAGCTCCAGTAAAGGAAACCAC
AGTCTAGGGAGCAGGTTACATTTGATAAGTCAAAGTCCTCCCACCTAGTG
CTCAACCCGCCAGAGCTCTGCTAGGTTTAGCCTGGGCAAAGAGGTGCTAT
CTTACTTTGCCACACTTCTGAATACAGAGGACCCATCCTCAAGCATAAAC
TGGTTATAGAATTCACGACGCTTTTCCAGGATAAGCCCCCGCGTAGACCT
TCTGGACCATTCGTGAGTCTTGTGGGGTGGAAGGGGGTTGCTCGTTCTGG
GTATCCCACCTCTAGGCTCTGGTCTGGTATGGTGGAATCCCCGACTTTTA
TATTTACCTCACTAGTCACTATAACGATTTTTTAAAACAGCCCGTTCCCC
TTGGTTGTCTCTTTTCCCCTCCTCTGCCGTTTCAGTGTATGGGCCTCTAC
CTCTCATTGTTTGTCACTCTTCCCTTATGTTTCCTTAGCTTTCACATAGG
TCTCTCTATCGTTCTTGGCTATTCATACTACTTCTAGATCCTATAACTTC
CATTCTTCCACAAGCACATTTCTGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p21.b1 MSMg01no399_p21.b1 CHROMAT_FILE:
MSMg01no399_p21.b1 PHD_FILE: MSMg01no399_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:08 2005
         (239 letters)



>mm_chr11_69879138_69879776
          Length = 639

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   cccggacgcagcttggcagactcagtcttgaacacgcattcaaccctgtaactgcctggt 61
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 438 cccggacgcagcttggcagactcagtcttgaacacgcagtcaactctgtaactgcctggt 379

                                                                       
Query: 62  agacgacagccccatgagatgcggcagctaacctgtggatgctttccatgctctgttgcc 121
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 378 agacgacagccccatgagatgcggcggctaacctgtggacgctttccatgctctgttgcc 319

                                                                       
Query: 122 tgcagagccagaattttcaggtctggaaatcaaaggcttctcccctattaaactctataa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcagagccagaattttcaggtctggaaatcaaaggcttctcccctattaaactctataa 259

                                                                    
Query: 182 actcacttgggtttggattctgttctagcaaagttagaagccataaatccaatggtc 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actcacttgggtttggattctgttctagcaaagttagaagccataaatccaatggtc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no399_p21.g1 MSMg01no399_p21.g1 CHROMAT_FILE:
MSMg01no399_p21.g1 PHD_FILE: MSMg01no399_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:08 2005
         (324 letters)



>mm_chr11_69692241_69692964
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagggagctctagcccccgtgttgatggaggttctccttgctccctatgtcacccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagggagctctagcccccgtgttgatggaggttctccttgctccctatgtcacccta 260

                                                                       
Query: 61  ggatggagtgtcccacaataggtggcttggaacatagtaaagaaacctcccagagagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatggagtgtcccacaataggtggcttggaacatagtaaagaaacctcccagagagtcc 320

                                                                       
Query: 121 tggcctcttaatggttactgtaggataagatgtcagctccagtaaaggaaaccacagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcctcttaatggttactgtaggataagatgtcagctccagtaaaggaaaccacagtct 380

                                                                       
Query: 181 agggagcaggttacatttgataagtcaaagtcctcccacctagtgctcaacccgccagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggagcaggttacatttgataagtcaaagtcctcccacctagtgctcaacccgccagag 440

                                                                       
Query: 241 ctctgctaggtttagcctgggcaaagaggtgctatcttactttgccacacttctgaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgctaggtttagcctgggcaaagaggtgctatcttactttgccacacttctgaatac 500

                               
Query: 301 agaggacccatcctcaagca 320
           ||||||||||||||||||||
Sbjct: 501 agaggacccatcctcaagca 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)