BAC Information

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BAC

Clone NameMSMg01-400E20
Chromosome11 (Build37)
Map Location 118,017,352 - 118,017,723
singlet/doubletsinglet
Overlap genenone
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400E20.T7 (MSMg01no400_e20.b1)MSMg01-400E20.TJ (MSMg01no400_e20.g1)
ACCAG499958AG499959
length789786
length of high quality
(start - end)
94 (75 - 168)372 (77 - 448)
definitionCHROMAT_FILE: MSMg01no400_e20.b1 PHD_FILE: MSMg01no400_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:34 2005CHROMAT_FILE: MSMg01no400_e20.g1 PHD_FILE: MSMg01no400_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTAAAATTTGCGGCGCTAAACGACTCCTATATTCAGAAGAGGGCGGAA
TCCAGGCTAGTACAGATACCAAGTGTTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCT
CCCTTTCTCTCTACACATACGGGCCCACACCCACACACACACACACACAC
ACACACACACAGTCTTGTTGGATTTATGAACATGTCTTCAGGGCTCAATA
GACCATGTGTTGGTGACCCAGGGGACAGACAGGAGCCCCTCCGGAGGGAG
AACCATGACTCTTTTGCCATTATTTGTTATCCGCGGAGNATTCTGAATCT
TCCAGTTGTCTTTAGACATGGCCATCACCTAGAGTTTCTAGCACCTTCCC
TCCTAGAGAGGACAGAAGCAGGACAGGCCAGCCTCTGGTGTTGTTCCTGG
GGAGTTGTTACCGTCAAATGCAAACCTGGTCCATCATCTTTGTGTCATTA
CCAGGGAGCTCAACACCCACCTAGGGTTTTTCCCTCCCCTTTAGATGGGA
AAAAGGGGAATGTTTTCGCAGGCATCCGGACGAGAAAAGGCACATATGAG
GTGACACCCCCCTCAAGAATATGCGGCCATGTTTCTTACCACTCGACTAA
TCTCCCACTATATATCATTTCTGTGGCTACGACAACGGAACCCTCTCTCC
TGTGGTAACTCCGCCCTTGACGTTCATACGCTTTATTGTCGAGACTACAT
GCGTTTTCTATGTTCGGTTATTCTGTAGAGCGTCTCCCC
NCCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGGCACACAATCTCAGAAAC
TATCTGCAGTTGGCAAAACCATGCCTCTACTAGAGCATGAGGCAAATCAC
AATCAGCTGCTGTGGACAGTTTGAGCAGCCCACATTCCACACCTGGGATT
AAATCAACACCACATTCTTATAGTATTGCCAGTATGCTGATGTGGTAGCA
GGCACTCTGTAGATGGCGGGTGGTGGTGATGAGCCCACTGTGGAAACTAC
AAGCTGTATCATGCTACAGTGAGGATGGGCTTTAGGGTCAAAAGCAAAGT
CAAGGTTACAGTGGTGGGACCAGGAACATGAGGGTGAGAGAAGAGCTTGG
CATGAGACAGACAGACAGACAGACTGACAAAGAGGAGAAAGAACCAGTGT
TGGCAGGTTGGCAGGGCCCTGAAGCCCTGGAACACCAACATGAGCAGCAC
ACTGTTGCCCTGCTATACACCCTCTGTTCCAACGTACCCAACTGTAGCCA
ATCTACACAAGACGGCTTCCGAGAACCCCACCAGGAACGGCTACACATAG
GCCCCGGCATCCCTTAGCGACCCCGGGGCTCCTCGGTAAAAAACCCTTTC
CCCATCTTGAAAGGGACAAGGACAGACAAACACCTTTCTGCAATCCCCAT
GGGCCCCTATTTTCAAAAAAATTGGGCGACAAAAATGGGTGACTCCCATA
ACAACTCTTAATCCCGTCTATCTTCTTTTTGACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_e20.g1 MSMg01no400_e20.g1 CHROMAT_FILE:
MSMg01no400_e20.g1 PHD_FILE: MSMg01no400_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:34 2005
         (372 letters)



>mm_chr11_118017152_118017923
          Length = 772

 Score =  704 bits (364), Expect = 0.0
 Identities = 370/372 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagggcacacaatctcagaaactatctgcagttggcaaaaccatgcctctactagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagggcacacaatctcagaaactatctgcagttggcaaaaccatgcctctactagagc 260

                                                                       
Query: 61  atgaggcaaatcacaatcagctgctgtggacagtttgagcagcccacattccacacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggcaaatcacaatcagctgctgtggacagtttgagcagcccacattccacacctgg 320

                                                                       
Query: 121 gattaaatcaacaccacattcttatagtattgccagtatgctgatgtggtagcaggcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaaatcaacaccacattcttatagtattgccagtatgctgatgtggtagcaggcact 380

                                                                       
Query: 181 ctgtagatggcgggtggtggtgatgagcccactgtggaaactacaagctgtatcatgcta 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtagatggggggtggtggtgatgagcccactgtggaaactacaagctgtatcatgcta 440

                                                                       
Query: 241 cagtgaggatgggctttagggtcaaaagcaaagtcaaggttacagtggtgggaccaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cagtgaggatgggctttagggtcaaaagcaaagtcaaggttacagtgatgggaccaggaa 500

                                                                       
Query: 301 catgagggtgagagaagagcttggcatgagacagacagacagacagactgacaaagagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgagggtgagagaagagcttggcatgagacagacagacagacagactgacaaagagga 560

                       
Query: 361 gaaagaaccagt 372
           ||||||||||||
Sbjct: 561 gaaagaaccagt 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)