BAC Information

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BAC

Clone NameMSMg01-402A10
Chromosome11 (Build37)
Map Location 62,055,964 - 62,056,503
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402A10.T7 (MSMg01no402_a10.b1)MSMg01-402A10.TJ (MSMg01no402_a10.g1)
ACCAG501272AG501273
length7531,314
length of high quality
(start - end)		541 (65 - 605)---
definitionCHROMAT_FILE: MSMg01no402_a10.b1 PHD_FILE: MSMg01no402_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:47 2005CHROMAT_FILE: MSMg01no402_a10.g1 PHD_FILE: MSMg01no402_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTACACATGTCAAGACACACACCACATACGTATACTTCAGAGGAACAT
ATGCAGGGAACATATATGCCATACATAGGAATATACACAAACACACACAC
ACATGAACATGCAGGCTCTCAGACGCACACATCAAACAACCAAGCTTTGT
TGCTATGAACAGACTGTATCTTCTTTGCTTCCTAATTATCTACACGTGGG
CTCTAGCAGTCTCCCTCCTAGGCTCACTGCCCCACTTCCATTCTTGGGAG
TACTTTGTCCTTTCTTAATAAGTTGTGTCTATTTCCATTCTACCCTAATT
TAAAAGGGACGACTTTGGGCCACTGATGTGGGTCAGTGGACGAAGGCCCT
TCTGCTGAGCTGAAGTTCAATGCCTGGGACCCACATAGTGGCAGGAGAAA
ACCAGCTCTGGCAGGTTATCTGCTGGCTTCCACCCCTACCCCCAAATAAA
TAAACATCTCTCTTGGAAGCTGCTGGGATTTTTCACGGAACCTGCACTGT
GTTTGTCCTTAAACACTAGTGAAATTGTCTTACACGTTAAAGAAAAAAAG
TTGGTAAAGTATTTTCCAGCAAGCATGAGAGCATGAGTTTGGTTCCCCAG
CACTGTTAGGCATGTTTGTGTGAGCCTGAAACTTAAAAGCCCGTTTCAAA
ATACACCATTAAGGAAAGAAACTGGGNAATGTGTTGTGCGTGTGCGCCCC
GTC

NATTCAGTAATNTCGTATTTCTTATTGCTAGCTATACGGAGCGAGATTTA
TCCACAATAAGAACACACACGGCGCGTGTGTGTGGCGCGCGTTTTCGCCC
CACTACANNCCTAGTGCCATCGCCACGCCCACCTCCCACAACTACATCAT
CAGATCATGCCGTAGGTCAGATATGACGAATACCTGAGTCACACGCACCA
ACATAGAACGAGCGTGTGCCGCCGGGTGCAGGAAGAAGAACTCACAATAT
ATAATTGACCAAGACTACCCACTCCTCTCATTATCTCTGTAATATTATCT
TGTATCAATGTGCTGTGTCGGTCTGTCGTGTGGCGCTTGTGTGTGGATAG
TTGTACCCTGGCGTCTGACTGGNATACGCTNGCGATCGAGCGTACAGAAC
ACTAGCCACACGCAGAACATCTAGAGACAATATGAGAGAGGAGAAATAGA
TCTAGAATAGGAGAGTGAGAGACAGAGATAGAATAGTATGTAGTGATGAA
GAGATAAATAAGCAGCAAAGATNAATACTACACGAGGCGACAATCCTCAT
ATATTAACCACATAGTATACAGATAGCGTACATGTAATAGCATAGAAATA
GTACTAAGAATGCCCAGACTCAGCGCACACAGACGAACATAAATAACACC
AGCACAAACGATAAGCGAANACTATGTACAGAGAGAGCACAGACAGCGCC
GCGATATATAACTCCGACTCACCAAACTCAAAATCAGTGTCGCTAAAATC
GATCGCGCGACGACGTGCGTGCATAACATACAGATAACTACCACTAGTAN
CGCGTATAGATGAAACACAAACGATAATATAAGAGCGTACACAATAATTG
AGTACGCCGATGCATGACTGCGCACGAACGAGATAACAGACCGATTACTA
CACTCATATCATACCATCAGCGACACAGGAACACATGACCTCTATCCGTT
ACTATACGTCACGACACGCAAATATTCATGCGAGTANGCGAAAGGCGTAA
GCGGCTGAGCACGAGCAGAATTGCGCTAACGCCACGTCTAGTATGATACA
ATGATCCTAGCGCCACGCGACCAATACGTGACGATGATGGCTACCAGCGT
ATACACGTAGTTATAGTAGAGATATAGCATCAGATGATCAAGTGACACGC
AGACACGCGCGCAGCGGGAGAGCGCGGACGAGGACCGCAACACAACCACT
CCTCCATTAGGTCGCTACCCCGCACGTCGATCCACGATCATATACTGTGT
AGAGACGTAGCAATCGTACCATAATTCAGTACATCATATACACATNCGAA
TCGTATATATGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_a10.b1 MSMg01no402_a10.b1 CHROMAT_FILE:
MSMg01no402_a10.b1 PHD_FILE: MSMg01no402_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:47 2005
         (541 letters)



>mm_chr11_62055764_62056703
          Length = 940

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacacacaccacatacgtatacttcagaggaacatatgcagggaacatatatgccatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacacacaccacatacgtatacttcagaggaacatatgcagggaacatatatgccatac 260

                                                                       
Query: 61  ataggaatatacacaaacacacacacacatgaacatgcaggctctcagacgcacacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggaatatacacaaacacacacacacatgaacatgcaggctctcagacgcacacatca 320

                                                                       
Query: 121 aacaaccaagctttgttgctatgaacagactgtatcttctttgcttcctaattatctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaccaagctttgttgctatgaacagactgtatcttctttgcttcctaattatctaca 380

                                                                       
Query: 181 cgtgggctctagcagtctccctcctaggctcactgccccacttccattcttgggagtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cgtgggctctagcagtctccctcctaggctcactgccccacttccattcttgggaatact 440

                                                                       
Query: 241 ttgtcctttcttaataagttgtgtctatttccattctaccctaatttaaaagggacgact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtcctttcttaataagttgtgtctatttccattctaccctaatttaaaagggacgact 500

                                                                       
Query: 301 ttgggccactgatgtgggtcagtggacgaaggcccttctgctgagctgaagttcaatgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgggccactgatgtgggtcagtggacgaaggcccttctgctgagctgaagttcaatgcc 560

                                                                       
Query: 361 tgggacccacatagtggcaggagaaaaccagctctggcaggttatctgctggcttccacc 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggacccacatagtggcaggagagaaccagctctggcaggttatctgctggcttccacc 620

                                                                       
Query: 421 cctacccccaaataaataaacatctctcttggaagctgctgggatttttcacggaacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctacccccaaataaataaacatctctcttggaagctgctgggatttttcacggaacctg 680

                                                                       
Query: 481 cactgtgtttgtccttaaacactagtgaaattgtcttacacgttaaagaaaaaaagttgg 540
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct: 681 cactgtgtttgtccttaaacactagtgaaattgtcttagacgttaaagaaaata-gttgg 739

            
Query: 541 t 541
           |
Sbjct: 740 t 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space:   493830
Effective search space used:   493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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