BAC Information

Click to search

BAC

Clone NameMSMg01-403A12
Chromosome11 (Build37)
Map Location 67,790,645 - 67,790,972
singlet/doubletsinglet
Overlap geneStx8
Upstream geneA730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403A12.T7 (MSMg01no403_a12.b1)MSMg01-403A12.TJ (MSMg01no403_a12.g1)
ACCAG502038AG502039
length786773
length of high quality
(start - end)
---327 (70 - 396)
definitionCHROMAT_FILE: MSMg01no403_a12.b1 PHD_FILE: MSMg01no403_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:09 2005CHROMAT_FILE: MSMg01no403_a12.g1 PHD_FILE: MSMg01no403_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCCGCCTGTAATAAGACTCACTTTCCNAAGAGGAGCCGCGGAAAG
CCATGTTTCCCCTACCAGTTCAGGAGGCCTTGGAACAGAGCAGAATCACA
GGAAGAGAAGACTCCTGCAATGGAAGGAAGAATCTTTTCCATCACGACCA
CTTTAGCTGGTACTACAGCATCTGACGCCAAGTGCTTTAAGATCATTAGC
AGCCTCATATACGTTAGAACAGGTATCAGAATGTCGACTGGATTCTCTGT
ATTGTGAACAGGGTACACTCAGTGGTGAGTATTCACGAGGAAGGGCACCT
ATGCCCATAGTTCTATCAACATGCACACAACGGATTGCTGTCTGTGGAGC
TGTATTTAAAGACCAGGTTGCCTAGGGTGGTAAAGGTTAATGAAGTCATA
GGTTGGGGCACCAATGCGACTGGACAGGCGTTCCTGTAAGAAGAGATTCT
TTCTTTGGATCCCAGAATGCCCATGTTCCAGCAATATAGTAAGATGATCT
CCCTGTGCTATCCATGGAGAGAGATTTTCATCCGAAGTCCACCCCTGTCT
GATATCCTGTCGCTTGCAGTTCCAGATCCCCGCCTTCGCTTGACTATTAC
CCCTGTTTTTTGTTCCCGCCCTCGATGTTTTTTTTTTATATCTTTACCCC
GCTTGTTCCGCCGTTATCCTTCTTTATCTCTCGCTTGTCCCCTCATTTTT
CGCTCGTTTCTTCCTCTCCCCCATTGTTATTTTCACCCATCACTCCTCTC
CTCTCGCTTTATTCCCCCCTTACACCCTCTTATCCT
TAATCTGGGACGCCTGGGGGCCGCCCTTTCAAATACATTAGGNGAACTAT
AGATTACACGCAGAATTCCATCATACTCAAAATATTCTCAGCTGGCTTTT
CAGGGGCTTCCTCCTTTGTTAGCTTTTCAAAACCAGCACCTGTACCTTTT
GTGAGTGTTAGCTGGTCCTGGGAACTGAACTCAGGTCCTCTGGAAGAGCA
GCTCTTGACTGCTGAGCCAACTTTCTAGCCCCATCCTTTACCTTTTTTTT
TTTTTTTCTTCTTTTTTTAAAGGCAAAAACAGCCTCTTTACAAAAGGATT
CATATCATATTTATTTTGATGCCTTCAGAGAGGGCCTGTGCAGATAGGGT
TTTTTTGTTTGTTTGTTTTTGTTTTTTAAAGAAATCTCTTACTGGTCCTC
TACTTTGTTTTACGAACAGTGACGGGTGATAAGATGTGCCCACCCTTGTA
TACGTTCGGTAACGTCCGCACCCCCGTCCATATGCCCCCATTTTCCACTT
TTTCCTGCCCGCTCTCCCTTTTATTTTTCCCCCTTTTTACCCCGTCTTCC
TTTTCCTCGCCTTCCTCTTTCCCCCCCTCCCCCTCCCGTTTTTCCATCCT
ATTTTTCCCCCTCCCCTCCTTTCCTTTTTCCCCTCTCCCTTTCCCCTCCC
CCTTTTTTTTTCTCCCTTTCCCCTTCCCCTTTTCCTCGCCTCCCTTTTTT
TTTTCTTTCCCCCTTCTTTTTTCGTTCCCCTCCTCCCCTACCTATACCGT
CTTTTCCCTTTATCTTCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_a12.g1 MSMg01no403_a12.g1 CHROMAT_FILE:
MSMg01no403_a12.g1 PHD_FILE: MSMg01no403_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:10 2005
         (327 letters)



>mm_chr11_67790446_67791172
          Length = 727

 Score =  588 bits (304), Expect = e-172
 Identities = 322/328 (98%), Gaps = 1/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatactcaaaatattctcagctggcttttcaggggcttcctcctttgttagcttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atcatactcaaaatattctcagctggcttttcaggggcttcctcctttgttagcttttca 259

                                                                       
Query: 61  aaaccagcacctgtaccttttgtgagtgttagctggtcctgggaactgaactcaggtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaccagcacctgtaccttttgtgagtgttagctggtcctgggaactgaactcaggtcct 319

                                                                       
Query: 121 ctggaagagcagctcttgactgctgagccaactttctagccccatcctttaccttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctggaagagcagctcttgactgctgagccaactttctagccccatcctttaccttttttt 379

                                                                       
Query: 181 ttttttttctt-ctttttttaaaggcaaaaacagcctctttacaaaaggattcatatcat 239
           |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 380 ttttttttttttctttttttaaaggcaaaaacagtctctttacaaaaggattcatatcag 439

                                                                       
Query: 240 atttattttgatgccttcagagagggcctgtgcagatagggtttttttgtttgtttgttt 299
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggtattttgatgccttcagagagggcctgtgcagatagggtttttttgtttgtttgttt 499

                                       
Query: 300 ttgttttttaaagaaatctcttactggt 327
           ||||||||||||||||||||||||||||
Sbjct: 500 ttgttttttaaagaaatctcttactggt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)