BAC Information

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BAC

Clone NameMSMg01-403F08
Chromosome11 (Build37)
Map Location 78,659,967 - 78,660,389
singlet/doubletsinglet
Overlap gene1810012P15Rik
Upstream geneMyo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik
Downstream geneNos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403F08.T7 (MSMg01no403_f08.b1)MSMg01-403F08.TJ (MSMg01no403_f08.g1)
ACCAG502268AG502269
length776764
length of high quality
(start - end)
257 (45 - 301)423 (74 - 496)
definitionCHROMAT_FILE: MSMg01no403_f08.b1 PHD_FILE: MSMg01no403_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:35 2005CHROMAT_FILE: MSMg01no403_f08.g1 PHD_FILE: MSMg01no403_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGCTAGCCTGGGCTATATGCTACCTGGTTTTGAAAATAAGATAA
AAATTAAATTAAAATAAATTTAATTTTATAAAAATTATATATATAATATA
AAAAGTAACACACACATATATATGTGTATATATATATGTGTGTGTGTGCA
TATATATACATATGTATATATGTGTGTGTATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATACACACACACATATATATATATATATATATGTGTGTGTGTGTGTTTT
TTTTATATATATATATTATATATATATATATATATATTTTTTTTTTTTTT
TTTTATTATACAAAAAAAACAGAATATATATAGCGCGCGCGCGCTCTCGA
GCGCGCGCGCTCTCGATAGAGAGAGGGGCGTGCGCGCGCGCGCGAAATAT
ATAGACAGATACCCCCCCNCNGNGNCNNNNNNNNNNNNNNNNNNNNTNNN
NNCCCCCCGCCTCCCTTCTCTTTCCTTCTCCCCCGCCCCTTCTTTCTCCC
CCCCTCCTGCCCGGCTTCGTTCCCTCCCCTCGTCCCCCCCTCCCCCTCCT
CCCCCCTTTCTCCCTCTCCCCCGCCGTCCGCCCCGTCTCCTCTCCCCCGC
CCCGCTTCTCCCCTTGTTCCCCTCTTTCCCCCCCCCCCCCCCCCCTCTTC
CCCCCCCCCCTCTCCCCCCTACTACA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGATGATTCAAGAGGAAAAGTTAAGG
ACATTGATTTATCTCTCTGCCTCCAAAATCCAGACACCAAATGAAACAGA
GATGCCAGGCTTTTATTAGTAAATGAACCTAGTCTGGGGTCATAGGCTCT
TTCCCGAGAAGCTGGGTTTGACCATCTGTCTTCCAGAAGCAAACTACCAA
ATTCATAGCAAAAATCAGAAAAAGATGGGAACTAGAGAGATGTCGCAGTG
GTTAACAGTGCTTGCGGCTCTTTCCAGAAGACCTGGCTTTGGTCACAACA
CTGACACCAGATGACTCACAACCACCCGCAACTCCAGTTCTGATGCCCTC
TTCTGGCCCCTGTGACTGCGTGTGCATACGTGCATACTGTAGAGAATTAA
AAACAATAAAAATTAATCTTTGAAAAGGAGAGTACAGCTGGGTTGTCTCT
TTCCTGAGGGATCACTTGGATACTGTCTCTCATGATATACTGGGTTAATT
ATGTTCTTCTTTTCTACCCAGTACACAGCAATGAAAAGCTTTATGTCTTC
CCTACGAACCTGAAGGGGGGCCATTTTAGGGAATTGGGAGGGCTTACAAA
AGAATCAAATTAGCGGGGGGGGCCCGGCCATAACCCCCCCCTTTGGGAAT
TTAAATAGAAAAAACAAAGCTTCCGCGTCCTGTGGTTCCCAACCCCCTAA
CCATATTTTAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_f08.g1 MSMg01no403_f08.g1 CHROMAT_FILE:
MSMg01no403_f08.g1 PHD_FILE: MSMg01no403_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:35 2005
         (423 letters)



>mm_chr11_78659767_78660589
          Length = 823

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%), Gaps = 2/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatgattcaagaggaaaagttaaggacattgatttatctctctgcctccaaaatccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatgattcaagaggaaaagttaaggacattgatttatctctctgcctccaaaatccag 260

                                                                       
Query: 61  acaccaaatgaaacagagatgccaggcttttattagtaaatgaacctagtctggggtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 acaccaaatgaaacagagatgccaggcttttattagtaaatgaacctagcctggggtcat 320

                                                                       
Query: 121 aggctctttcccgagaagctgggtttgaccatctgtcttccagaagcaaacta-ccaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 321 aggctctttcccgagaagctgggtttgaccatctgtcttccagaagcaaac-agccaaat 379

                                                                       
Query: 180 tcatagcaaaaatcagaaaaagatgggaactagagagatgtcgcagtggttaacagtgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatagcaaaaatcagaaaaagatgggaactagagagatgtcgcagtggttaacagtgct 439

                                                                       
Query: 240 tgcggctctttccagaagacctggctttggtcacaacactgacaccagatgactcacaac 299
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 tgcggctctttccagaagacctggctttggttacaacactgacaccagatgactcacaac 499

                                                                       
Query: 300 cacccgcaactccagttctgatgccctcttctggcccctgtgactgcgtgtgcatacgtg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 cacccgcaactccagttctgatgccctcttctggcccctgtgactgcgtgtgcatatgtg 559

                                                                       
Query: 360 catactgtagagaattaaaaacaataaaaattaatctttgaaaaggagagtacagctggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catactgtagagaattaaaaacaataaaaattaatctttgaaaaggagagtacagctggg 619

               
Query: 420 ttgt 423
           ||||
Sbjct: 620 ttgt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)