BAC Information

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BAC

Clone NameMSMg01-403K13
Chromosome11 (Build37)
Map Location 121,824,248 - 121,824,674
singlet/doubletsinglet
Overlap genenone
Upstream geneCsnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403K13.T7 (MSMg01no403_k13.b1)MSMg01-403K13.TJ (MSMg01no403_k13.g1)
ACCAG502518AG502519
length758747
length of high quality
(start - end)
586 (61 - 646)187 (115 - 301)
definitionCHROMAT_FILE: MSMg01no403_k13.b1 PHD_FILE: MSMg01no403_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:02 2005CHROMAT_FILE: MSMg01no403_k13.g1 PHD_FILE: MSMg01no403_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
CATATCCACACACTATTGGCTTATTCAAACATTAACAGAAAGGGCATCAG
GACTTTGTTCCTGTGGGCTGAGGGCTTATCTTTGTTCACATAGCAACCAG
TTGATTTATGACTTTACCTGGCGCCAAGGGGCAATAGACAGAGGGGAGGT
TCTGGCCAGATGGTGTTGACTTAGATAATATAGCCCTGCTGGTCCTTGCA
TACCTTTTTATCTTTATAGTCAAGATGTTCTTAGGAATGCCTTAATAACA
GCCCTGCCCTGGCACGCCTGGGGGCTGTTCTGCTTTGTTCTCAGTCTCAG
GCTGGGCCAGTGGGCTCCTAAACAACTCACAAGTTACAATATTTCATCTT
CTTTCAGTACTTAAACTTTAGTTGGCTGAAAATTGTACATATATAGAAAA
CACATTTATTAAGGAGGCTTTGATTAAATGAGGCTTTCATGTTCTCCTTT
TGGACTGTGTGTGTGCACAAAGATATTAAGTCTGGTAAGTGTGTTTAGCA
TGTAGTTTTGTAATGTGCTCTATCCTTCAGCAGTACTAGTAATCCCTTAT
CCATGGGAAATGCATGATGAGACTCCTCGTCTTATGCATGCTGGCTTTCT
GAGCATGAATATTGATAATAAACTTTATCCTATAAATTATACCCATAACA
GGCTAACAACAATGTTTAACTGTATGCTACAGTAAAAGTAATGCATACCG
GATGTTTT
CTATGCTAGGGAAGGAGGNCGCCTTCAATACACTTTAGGNNGAACANAGT
TGCTAAACACACNTCNNAANGGNACCCAAGCTTCCTGCCAGGCTGGGGTG
TATCTGTACACTGAGCAGAAGGGAGGAGGAAGCCGTGCTAGGAGATGGCT
CAGTGGGTAAGGACGCATACTTAGTGCCGAACCTGACAACTTGAATTTGA
TCTCTGCACCACATGGTCAAAGGAGAGAACAGGTCCCTTTTCGTTGTCCT
CTGACTTCAACATGCACACTATGAAGTGTGCACATGCATGCACATGCATG
CTTACATAATTTATAAAAAAGTTGAGAGAAGGGCTAGGGGCCAGCCAGGA
CCTGCTGTGTACACCACTTTCCAGCACTAAGGGATGGAACCTCACTGAGG
GAAGCTCTGCAGGTATATCAGGGTTTGGGGTACTTCAGTGAGCAGACACT
GTTGCTCCTCATAAAGTGGTTTGCAGCTACTTTGCACAGATGATAGGAAG
CTCGTCCAATTATTCCAAAATACACATATCCTTCGGACACAGATCACACC
TGACACACTGCCTGGATAGACATACCTGTCTTATAATTCTGGAACCTGCG
TTTATCCTTAGACCATATCACCTCATGGGCACTTGTTTTTTTTTTTGTCT
ACATACCCCATCTCACTTATTTCTTATCTACGCTTCGCCCCTGGCGCACC
CTGTTTTCCCCCTTTTGCCCTCCTTTCCCTTCATTTCTTTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_k13.b1 MSMg01no403_k13.b1 CHROMAT_FILE:
MSMg01no403_k13.b1 PHD_FILE: MSMg01no403_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:02 2005
         (586 letters)



>mm_chr11_121823689_121824674
          Length = 986

 Score =  772 bits (399), Expect = 0.0
 Identities = 420/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 157 tgacttagataatatagccctgctggtccttgcatacctttttatctttatagtcaagat 216
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 986 tgacttagataatatagccctgctggtccttgcatacctttttatctttacagtcaagat 927

                                                                       
Query: 217 gttcttaggaatgccttaataacagccctgccctggcacgcctgggggctgttctgcttt 276
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gttcttaggaatgccttaacaacagccctgccctggcacgcctgggggctgttctgcttt 867

                                                                       
Query: 277 gttctcagtctcaggctgggccagtgggctcctaaacaactcacaagttacaatatttca 336
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gttctcagtctcaggctggggcagtgggctcctaaacaactcacaagttacaatatttca 807

                                                                       
Query: 337 tcttctttcagtacttaaactttagttggctgaaaattgtacatatatagaaaacacatt 396
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 806 tcttctttcagtacttaaactttagttggctgaaaattgtacgtatatggaaaacacatt 747

                                                                       
Query: 397 tattaaggaggctttgattaaatgaggctttcatgttctccttttggactgtgtgtgtgc 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tattaaggaggctttgattaaatgaggctttcatgttctccttttggactgtgtgtgtgc 687

                                                                       
Query: 457 acaaagatattaagtctggtaagtgtgtttagcatgtagttttgtaatgtgctctatcct 516
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ataaagatattaagtctggtaagtgtgtttagcatgtagttttgtaatgtgctctatcct 627

                                                                       
Query: 517 tcagcagtactagtaatcccttatccatgggaaatgcatgatgagactcctcgtcttatg 576
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 626 tcagcagtactagtaatcccttatccatgggaaatgcatgatgatactcctcgtcttatg 567

                  
Query: 577 catgctg 583
           |||||||
Sbjct: 566 catgctg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)