BAC Information

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BAC

Clone NameMSMg01-404A07
Chromosome11 (Build37)
Map Location 118,023,801 - 118,024,223
singlet/doubletsinglet
Overlap genenone
Upstream geneSept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404A07.T7 (MSMg01no404_a07.b1)MSMg01-404A07.TJ (MSMg01no404_a07.g1)
ACCAG502791AG502792
length749776
length of high quality
(start - end)
427 (72 - 498)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no404_a07.b1 PHD_FILE: MSMg01no404_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:31 2005CHROMAT_FILE: MSMg01no404_a07.g1 PHD_FILE: MSMg01no404_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGTGTXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATCCGCGGAATT
CTTCTCTTTTACATATAAGACTCAGGCTGAAACAGGGTCACCTGCTGCTG
GTTGTAGAGGCAGGCTCAGTGAACAGTGTTTAATGTCCCAACGTTGGGTG
AGAAGTAGGCTTTGCCCTGCCTGCCTTTTCTCTAGTGTTTCCTAACCTGG
CTCTGAGGTTTGCTTGTAAAGCATTCCTGGGGAGCTCATGGAGGTACTGG
GGCTTGGAAGGCTATTTTGAAAGGTTCTAGAGTCTTGGAGAGGTGAGTCC
TTGAGGAAGTAGGCCACTTATTACCTAGTTCCTGAGACTGTCTTGTCTTC
TCTCTGCCTCCTGTGTGCCGTGAGGTGAGCGGCCTCCTCCACATGGTCCT
GCTGCCGTGATGCTCCGCCTCACCGTATCAGGATCATCAGATCCAGGAAC
CGCGGATGAAACCTCTGAGGCTCTGAGCCAATGAGCAGCACTGATGCTCT
GAGCCAGTGAGCAGTATCCCTTTAGGTCTCAGGCATTCAGCTCACTTCCG
GGGAGAGCTCACAGAGACAGACCACTGATCTGTGACTTCCATCATAGCTG
ACTGTGTGATTACCAAAGGTGTTGTGCACTCATCTTCATAACCCATGTTC
TGCCTATAATGTTTTCAGGCTAGGGCCTTCACATGTCCCCATATATACCC
TGGTCCTCGCCCCCTTTTATCATCCCCTTCCGCTTTTTTTTTTCTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGTTAGCCTAAGTTACATGAGACCCTCCC
TGTCTCTTAATAAACTAAAATAGTTGAAAAAGTGAATTTTATTTGTGTTG
TTTTTTGTGTAGCCCTGGCTGTCCTGGGAACTCTCCTTATAGACCAGGCT
GGTCTCGAATTCACAGAGATCCACCTGCTTCTGCCTACTGTGTGTGGATA
ACCGGTCTCTAATATTCTGGAATGCATTTGTCTTACTCTTGGGTGGCCAC
TTGCTTTCCAGCGATGTGTTTTACGTGTAATCAACTCCAAACCTCTGATG
GAAATGAGTCGCCCCAGATAGTGCCTGGTATTCTGACTGACCAGGGATCC
AGGATCACTTATATGGTGATCATACATTGCACGTGGGCTCTGGTTTCTGA
GCATCTCACTATACCGACTCATTTATTCTACGACTTTCACCGTTTATCAA
TAGCACGCATTTGTTTATTATTTTGGTTACACCCCATATTGTTTTTTTTT
CTTAGGTCCCTTGGTTTTTCTTACGTCTTAAATTTTTTTCCGCCCCCCCC
TTCTAATTTTGTTTTTTTTTCTCCCCACTCTTCTTTATTGTTCCCTCCTC
ATATCTTACTTCTCTTTCCTTCTTTCCTCTTCCTCTATTATTACCTTTTC
CCCCCCTCTTTTATCTTTCATCCCTCTTCCTCTTCTTTCTATTCTCCTCC
CCCCTATCTCCTCTTCCTTCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_a07.b1 MSMg01no404_a07.b1 CHROMAT_FILE:
MSMg01no404_a07.b1 PHD_FILE: MSMg01no404_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
         (427 letters)



>mm_chr11_118023601_118024427
          Length = 827

 Score =  756 bits (391), Expect = 0.0
 Identities = 415/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggctgaaacagggtcacctgctgctggttgtagaggcaggctcagtgaacagtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcaggctgaaacagggtcacctgctgctggttgtagaggcaggctcagtgaacagtgttt 564

                                                                       
Query: 61  aatgtcccaacgttgggtgagaagtaggctttgccctgcctgccttttctctagtgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatgtcccaacgttgggtgagaagtaggctttgccctgcctgccttttctctagtgtttc 504

                                                                       
Query: 121 ctaacctggctctgaggtttgcttgtaaagcattcctggggagctcatggaggtactggg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaacctggctctgaggtttgcttataaagcattcctggggagctcatggaggtactggg 444

                                                                       
Query: 181 gcttggaaggctattttgaaaggttctagagtcttggagaggtgagtccttgaggaagta 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 gcttggaaggctattttgaaaggttctagagtctttgagaggtgagtccttgaggaagta 384

                                                                       
Query: 241 ggccacttattacctagttcctgagactgtcttgtcttctctctgcctcctgtgtgccgt 300
           ||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 383 ggccacagaggacctagttcctgagactgtcttgtcctctctctgcctcctgtgtgccat 324

                                                                       
Query: 301 gaggtgagcggcctcctccacatggtcctgctgccgtgatgctccgcctcaccgtatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaggtgagcggcctcctccacatggtcctgctgccgtgatgctccgcctcaccgtatcag 264

                                                                       
Query: 361 gatcatcagatccaggaaccgcggatgaaacctctgaggctctgagccaatgagcagcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gatcatcagatccaggaaccgcggatgaaacctctgaggctctgagccaatgagcagcac 204

              
Query: 421 tga 423
           |||
Sbjct: 203 tga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)