Query= MSMg01no404_b18.b1 MSMg01no404_b18.b1 CHROMAT_FILE:
MSMg01no404_b18.b1 PHD_FILE: MSMg01no404_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:39 2005
(437 letters)
>mm_chr11_41532463_41533299
Length = 837
Score = 690 bits (357), Expect = 0.0
Identities = 415/435 (95%), Gaps = 3/435 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgagaataactgtctgtattgtatactactccagtccagtgactaatgtgga 64
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcagtgagaataggtgtctgtattgtatactactccagtccggtgactaatgtgga 264
Query: 65 taaaactcctaaagaacacattttggaaaccttagtcttataaggactggcaaatcttcc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 gaaaactcctaaagaacacattttggaaaccttagtcttataagggctggcaaatcttct 324
Query: 125 caacattgtcttaatatgaaacatgagttttattattctgggctgagattcagagattac 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caactttgtcttaatatgaaacatgagttttattattctgggctgagattcagagattac 384
Query: 185 acaaatttctattttcctgagctattattcatataaatgtcttcaaaaacaccacctagg 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaatttctattttccagagctattattcatataaatgtcttcaaaaacaccacctagg 444
Query: 245 acaaagggtgaatattgttcttcatactctctgcagaggtctaggaaatattagaacttt 304
|||||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 445 acaaagggtgaataatattcttcatactctctgcaaaggtctacaaaatattagaacttt 504
Query: 305 ataataggaagagtagaacagtaaatatattatttaaaaataac--atgtttttctattg 362
|||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ataataggaagaatagaaaagtaaatatattatttaaaaataacttatgtttttctattg 564
Query: 363 cttaagttttcttctttgtgctataaaaaagacttggacactgtaaagaaaaaaatgagc 422
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 cttaaattttcttctttgtgctataaaaaagacttggacactgtaa-gaaaaaaatgagc 623
Query: 423 atgagtccaagaaga 437
|||||||||| ||||
Sbjct: 624 atgagtccaaaaaga 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_b18.g1 MSMg01no404_b18.g1 CHROMAT_FILE:
MSMg01no404_b18.g1 PHD_FILE: MSMg01no404_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:39 2005
(422 letters)
>mm_chr11_41748863_41749684
Length = 822
Score = 777 bits (402), Expect = 0.0
Identities = 417/422 (98%)
Strand = Plus / Minus
Query: 1 tatatgctgttgaaaaataggttggtgaaaggagctacgttaacacatagagaccctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tatatgctgttgaaaaataggttggtgaaaggagctacgttaacacatagagaccctgca 563
Query: 61 gcatgcacaaatgctagaaaagaagaagattttccattttctgagtgaaagactgaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcatgcacaaatgctagaaaagaagaagattttccattttctgagtgaaagactgaagaa 503
Query: 121 aggaagacaggaacctcaattcttccattattgaagaaccagatttcaagtaggctgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggaagacaggaacctcaattcttccattattgaagaaccagatttcaagtaggctgcaa 443
Query: 181 atgcattaaagtgggcatcaagtcttcctagagagatagctcccagtcagcaaatggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgcattaaagtgggcatcaagtcttcctagagagatagctcccagtcagcaaatggttg 383
Query: 241 tctctgtactgagacagaactgtagcaaacgctaacgtggttctttctaatttaaaagcc 300
||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 382 tctctgtgctgagacagaaatgtagcaaacgctaatgtggttctttcaaatttaaaagcc 323
Query: 301 attcttcacccttttccttccaaatcatataagtacttattccacatcaagaattcattg 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attcttcaccctcttccttccaaatcatataagtacttattccacatcaagaattcattg 263
Query: 361 actctgaagataaatcaggaaattaagcagaggaaaggcaagataaggtatattaaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actctgaagataaatcaggaaattaagcagaggaaaggcaagataaggtatattaaaatt 203
Query: 421 ta 422
||
Sbjct: 202 ta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
