BAC Information

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BAC

Clone NameMSMg01-404H03
Chromosome11 (Build37)
Map Location 47,360,376 - 47,360,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H03.T7 (MSMg01no404_h03.b1)MSMg01-404H03.TJ (MSMg01no404_h03.g1)
ACCAG503112AG503113
length740754
length of high quality
(start - end)
448 (61 - 508)212 (67 - 278)
definitionCHROMAT_FILE: MSMg01no404_h03.b1 PHD_FILE: MSMg01no404_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:07 2005CHROMAT_FILE: MSMg01no404_h03.g1 PHD_FILE: MSMg01no404_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCA
ACTGTCTCCTACCAAATGGCTGAGAAGCACCTGAAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCAAGGAAGGGGTGAAAGAGAAACACTCCTCCATGGCTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTG
GACATAGTACTACAATAGAGGATCCTGCAATATCTCTCCTGGGCATATAT
CCAGAAGATGCTCCAACTGATAATAGGAACACATGCTCCACTGTGTTCAT
AGCAGCCTTATTTATAATAGCCAGGAGCTAGAAAGAACCCAGATGTCCCT
CAACAGAGGAATGGATACAGAAAATGCGGTGCATTTACACAATGGAGTAC
TACTCAGCTATTACAAAGAATGAATTTATGACATTCTTAGGCACATGGAC
ATAACTAGAAAATATTATCCTGTGTGAGGTATAATACTTACCAAAGAAAA
AACCTGGTATGCCCTCCCTGATTATTGGATTCTACTCCCACATTCTTATT
AATTCCCATAAACCACTTGGCTAAAAACATTGAACTTCATCAGGAAGGAA
TAACCAAGGGCGGAAAACTCTCCCCCTTTTTATAAAGGCG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAAGGCAAAATAAACCATTTTCTTCCCAAATTGT
TTTCATTCTTGGTGTTTTAAAGTGGCAATAGAATTCTAGGAAAATAAGTT
ACCATCTTGGGATAACCTTCTACTTCTCAAGTGAGTGAGTGGCCTGTCTC
AGGATCTCTTGGCAGGATTAGGTTTTTATCTTAATTTAAAGGGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNTNNNNNTNTT
NNNNNTNNTTTTTTTTTTTTTNNNNNNNNNTNNNNNNTNTNNNNTNNNTT
TTTTTTCTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTCCTTTTTTNTTTTTTTTT
TTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTNNTTTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTCCCCCCCTTTTTTTTTTTTTCTTTTTTTTTTTTCTCCTTTCCCCTCT
TTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCTCTCTTCTTCTTC
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h03.g1 MSMg01no404_h03.g1 CHROMAT_FILE:
MSMg01no404_h03.g1 PHD_FILE: MSMg01no404_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
         (212 letters)



>mm_chr11_47360135_47360746
          Length = 612

 Score =  360 bits (186), Expect = e-104
 Identities = 198/202 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggcaaaataaaccattttcttcccaaattgttttcattcttggtgttttaaagtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taaggcaaaataaaccattttcttcccaaattgttttcattcttggtgttttaaagtggc 384

                                                                       
Query: 61  aatagaattctaggaaaataagttaccatcttgggataaccttctacttctcaagtgagt 120
           |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 aataaaattctaggaaaatcagttaccatcttgggataaccttctactcctcaagtgagt 324

                                                                       
Query: 121 gagtggcctgtctcaggatctcttggcaggattaggtttttatcttaatttaaaggggtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 gagtggcctgtctcaggatctcttggcaggattaggtttttatcttaatttaaaggtgtg 264

                                 
Query: 181 tgtgtgtgtgtgtgtgtgtgtg 202
           ||||||||||||||||||||||
Sbjct: 263 tgtgtgtgtgtgtgtgtgtgtg 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)