Query= MSMg01no404_i22.b1 MSMg01no404_i22.b1 CHROMAT_FILE:
MSMg01no404_i22.b1 PHD_FILE: MSMg01no404_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:16 2005
(488 letters)
>mm_chr11_115199948_115200835
Length = 888
Score = 835 bits (432), Expect = 0.0
Identities = 472/492 (95%), Gaps = 13/492 (2%)
Strand = Plus / Plus
Query: 4 gaattctttcctgctcc---cccagcctcagcctcggggttctactcaacagagaacact 60
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctttcctgc--caagcccagcctcagcctcggggttctactcaacagagaacact 252
Query: 61 gtggttgatcacacccctctggatttcctgggtggagtcccttcacaagttagcaggttc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 253 gtggttgatcacacccctctggatttcctgggcggagtcccttcacaagttagcaggttc 312
Query: 121 acaccgacttttgctggtaagaagtcccagctctgaaag--------tgacagggcagta 172
|||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 313 acaccgacttttgctggtaagaggtcccagctctgaaagaggcccagtgacagggcagta 372
Query: 173 ctcaagtgaccctcactccctgggcaaaacatcaacccactttaggatgagaaattgagt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctcaagtgaccctcactccctgggcaaaacatcaacccactttaggatgagaaattgagt 432
Query: 233 tcagaaatgagctggcccagtcatggatagggagggagaggtggtccttggtgtgttcaa 292
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 433 tcagaaatgagctggcccagtcatggataggaagggagaggtggtccttggtgtgttcaa 492
Query: 293 aataatcaattctttgtgttcatgggcagcaggaggggcttttgtatatcgcttgatctg 352
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 493 aataatcaatcctttgtgttcatgggcagcaggagggacttttgtatatcgcttgatctg 552
Query: 353 tgtcaaccttaggtcccataaggaatattggaagctccgatgtcccggctagagaggctg 412
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 553 tgtcaaccttaggtcccataaggaatatcggaaactccgatgtcccggctagagaggctg 612
Query: 413 cataggagctgggatggattccaacccaggtccccttgccagccgatctatttactctct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cataggagctgggatggattccaacccaggtccccttgccagccgatctatttactctct 672
Query: 473 ctccctctccag 484
||||||||||||
Sbjct: 673 ctccctctccag 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_i22.g1 MSMg01no404_i22.g1 CHROMAT_FILE:
MSMg01no404_i22.g1 PHD_FILE: MSMg01no404_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:16 2005
(471 letters)
>mm_chr11_115372714_115373583
Length = 870
Score = 864 bits (447), Expect = 0.0
Identities = 465/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 1 catgggcttttaattccacttagcgatgaaagcctccctctctggggattgagggaggac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 670 catgggcttttaattccacttagccatgaaagcctccctctctggggattgagggaggac 611
Query: 61 aaagaggcacgttggggttgattctaatatttcaagtgttttcagtcatttaaggtaaaa 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaagaggcacgttggagttgattctaatatttcaagtgttttcagtcatttaaggtaaaa 551
Query: 121 attcaaaacagttctacccagtaagaaagaacctgtagagctggagatgtggtggtttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 attcaaaacagttctacccagtaagaaagaacctgtagagctggagatgtggtggtttgt 491
Query: 181 ccatagcctgggcaagacactgggttctgcccccagcagctccccacttcccttcccccc 240
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccgtagcctgggcaagacgctgggttctgcccccagcagctccccacttcccttcccccc 431
Query: 241 taaaaaatcaccctatgaatttatctatacctttagtagtaatttaaacaacttaattac 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taaaaaatcacccca-gaatttatctatacctttagtagtaatttaaacaacttaattac 372
Query: 301 ctgggaacctggttggggggtgtgagcctgttataccggcactagggaggcaggagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgggaacctggttggggggtgtgagcctgttataccggcactagggaggcaggagtggg 312
Query: 361 agggtggcaagtatataccataacacatttatcttgatttatataatgaatagagctggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agggtggcaagtatataccataacacatttatcttgatttatataatgaatagagctggt 252
Query: 421 tttgtctgtgtgtgtgtatgggatctcagccatgtggcttttcactggcct 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttgtctgtgtgtgtgtatgggatctcagccatgtggcttttcactggcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
