Query= MSMg01no404_j22.b1 MSMg01no404_j22.b1 CHROMAT_FILE:
MSMg01no404_j22.b1 PHD_FILE: MSMg01no404_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:21 2005
(459 letters)
>mm_chr11_83919455_83920311
Length = 857
Score = 851 bits (440), Expect = 0.0
Identities = 450/454 (99%), Gaps = 2/454 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgacccttctgcctctgcctccggagtgttgattataggtgtgtgcctccatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattcctgacccttctgcctctgcctccggagtgttgattataggtgtgtgcctccatg 662
Query: 65 tctgggcttcatgtattctaagcagaagcactcagcccagaaatgtatgattatttatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tctgggcttcatgtattctaagcagaagcactcagcccagaaatgtatgattatttatac 602
Query: 125 ccatcttctttctaatggaaagaaaaggtttctttattgcttctctatctcttagtagca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 601 ccatcttctttctaatggaaagaaaaggtttctttattgcttctctatctctaagtagca 542
Query: 185 gaatttgggatatccgtagtatgtctgtctcactgtcttgctgacatctgctgatactgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatttgggatatccgtagtatgtctgtctcactgtcttgctgacatctgctgatactgt 482
Query: 245 gttgatttgactgcagatatggaataaacaaaccaagctttcagtggtctatgtaagtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttgatttgactgcagatatggaataaacaaaccaagctttcagtggtctatgtaagtaa 422
Query: 305 gagagttcctctctttccatgtttcttaggcaggatgtggctaatcaaatgtgcaccaaa 364
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagagttcctctc--tccatgtttcttaggcaggatgtggctaatcaaatgtgcaccaaa 364
Query: 365 accaaggaggagtgtgagaagcactacatgaagcatttcatcaataaccctctgtttgca 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 363 accaaggaggagtgtgagaagcattacatgaagcatttcatcaataaccctctgtttgca 304
Query: 425 tccaccctgctgaacctgaagcaagctgaggcgg 458
||||||||||||||||||||||||||||||||||
Sbjct: 303 tccaccctgctgaacctgaagcaagctgaggcgg 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 857
Length adjustment: 10
Effective length of query: 449
Effective length of database: 847
Effective search space: 380303
Effective search space used: 380303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_j22.g1 MSMg01no404_j22.g1 CHROMAT_FILE:
MSMg01no404_j22.g1 PHD_FILE: MSMg01no404_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:21 2005
(425 letters)
>mm_chr11_83755353_83756177
Length = 825
Score = 814 bits (421), Expect = 0.0
Identities = 424/425 (99%)
Strand = Plus / Plus
Query: 1 tttccacgcctatcacagccaggctccgcctcctggagcgacttccgctacggcctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccacgcctatcacagccaggctccgcctcctggagcgacttccgctacggcctgtgc 260
Query: 61 ggaagcagtcgcggatagaaagtggtaaacgcaggcgccgggaggccgtggggccttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagcagtcgcggatagaaagtggtaaacgcaggcgccgggaggccgtggggccttctg 320
Query: 121 ggtaaagatggattcctacgacctgtttcgccggcttggagccggcgccaagttcgacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaaagatggattcctacgacctgtttcgccggcttggagccggcgccaagttcgacgt 380
Query: 181 gaagcgcttctcagcagacgctactcgattccaggtactttctgtacgcggggagccgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagcgcttctcagcagacgctactcgattccaggtactttctgtacgcggggagccgcg 440
Query: 241 tgaccgagaaggggcgggatccggagattgagaccgccgccaaccgggcagcgggcgcgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgaccgagaaggggcgggatccggagattgagaccgccgccaaccgggcagccggcgcgc 500
Query: 301 tggagaccccgaggccaggctccgatcacccccaagcatttccctcctgggatttagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggagaccccgaggccaggctccgatcacccccaagcatttccctcctgggatttagctt 560
Query: 361 aacctaagatttaccccagacttctgaaggactgtttactgagccccggtagactcagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacctaagatttaccccagacttctgaaggactgtttactgagccccggtagactcagtt 620
Query: 421 gagcc 425
|||||
Sbjct: 621 gagcc 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
