BAC Information

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BAC

Clone NameMSMg01-404L06
Chromosome11 (Build37)
Map Location 7,096,343 - 7,096,666
singlet/doubletsinglet
Overlap genenone
Upstream geneNudcd3, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347
Downstream geneIgfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L06.T7 (MSMg01no404_l06.b1)MSMg01-404L06.TJ (MSMg01no404_l06.g1)
ACCAG503308AG503309
length760761
length of high quality
(start - end)
319 (64 - 382)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no404_l06.b1 PHD_FILE: MSMg01no404_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:28 2005CHROMAT_FILE: MSMg01no404_l06.g1 PHD_FILE: MSMg01no404_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCAAAACGAATCACTAATTCCCAAGAATCCGCGGAATTCTC
TATCCTTCCGGAGACTCTTCCTCAGTCTTTACCTGACATAACCTACCTTC
CCACCCCATGAGTCCTCTCTCCTGGCAAGTGTGCTGCTCACTGTGGCCCA
CTGCCCTATGTCTCTGATTCCTTGTCTGTTAGGCTTTTTCTGTACCTCCA
ATTAAAAAGCCAGCCAGTCACTATTAACATACCTGCTCAGTAGTGTGCAC
CTGGTTTCTTTGAATGAGAGGGCAGACATTGGTAGGCGATGCATCGGTGC
ACATGTGTTTAAAGTGCTTTAGTCAAGTCACCCAGGAAGCCATCCCCCAA
GGCTAAGCTACAGGTTGCAGTGATGAACTGCTGCGTCACAGGTATGTGAG
AGTTTGTCCAGCGTGTTCCAGGGCAGTCTCTGTGACCTTGACCTAAAATC
TCCTGTAACCTTTGTCTTCCATATCCTCCTCTAGAGTCTGTCGCTAAAAT
CTCCCATGCTTTCTTAATTGCCCTGTCTAATTAAATAGACCCCCTGTATT
AACATCCACTCTCCGCACCCCCTATACTTTTTTTCTTCTATTCTCTCTTT
CCCTTAATTTCCCCCCATTTTTAATATTCTTTTTTATTCCTCCCCCTTCC
TTTATTTTTTCTCTCCTTTTTTTATTAATTACTTTCCCCCTCTTAATAAT
ATATATAAAATTTTCCCTTTTTTTACTTCCTCCCCTCTCCCCCTTCTTTT
ATTCTTTTTT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACATCCAAACTCATGTGCAGATGTGAAT
TCATGTTCAAGGCTACATATCAGAAGAAAAAGAAAGAAGAAAAGCACAGA
AGCCTGTTCTTGCTCAGGGCTGGAGTTCAGTTTCCCAGCACAGATGTCAG
GCAGCTTAGCTCCAAACCATCTGCTCCAGGAGATCCCATGCCCTTCTGGC
TTCCACAGGCACACACACACACATGTGCATAGACACACACACAAGCACAC
ACACACACACACACACTCTTTTCTTGTGCATAGACATATACACATGCATA
TTTGCACACATGCACAAATAACAAAAAATAAATGTCTTTTTAAAAAACTG
AGGAGGCTGTAAGTTGTGCCTCTGATGACCCTTGAGTTTGTTCATAACAG
GAAATTGGTACTATTATAGAGTCAGGTATTTAGATGAAAACCAAAGATTT
TTCCTTTTCTGAATGGGCAGAGAGACTTAACAGATCCTGAATATAACAAA
AAAACTTGTTCACATTCAGGCAATCCCCTAATTTACCCTAGCTACATTCT
TATGACCATCTAACTACCTCCCCATCCACGGTCTCATTATAATGGTTTTA
AACAATCCCCATTGACTTTCTGCTTAAATCCTGGGGGTTAACGAGCGGCC
TTATAGTTTTTTGGTCCCTCCTTTTTTTATTTTTTAATGTGGGATCCTCC
CCCTACACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l06.b1 MSMg01no404_l06.b1 CHROMAT_FILE:
MSMg01no404_l06.b1 PHD_FILE: MSMg01no404_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:28 2005
         (319 letters)



>mm_chr11_7096143_7096866
          Length = 724

 Score =  518 bits (268), Expect = e-151
 Identities = 308/324 (95%), Gaps = 5/324 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttcctcagtctttacctgacataacctaccttcccaccccatgagtcctctctcct 60
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttcctcagtctttatctggcataacctaccttcccaccccatgagtcctctctcct 260

                                                                       
Query: 61  ggcaagtgtgctgctcactgtggcccactgccctatgtctctgattccttgtctgttagg 120
           |||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||
Sbjct: 261 ggcaagtgtgctgctcactgtggcccactggcctatgcctctgattccttatctgctagg 320

                                                                       
Query: 121 ctttttctgtacctccaattaaaaagccagccagtcactattaacatacctgctcagtag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttctgtacctcgaattaaaaagccagccagtcactattaacatacctgctcagtag 380

                                                                       
Query: 181 tgtgcacct-----ggtttctttgaatgagagggcagacattggtaggcgatgcatcggt 235
           || ||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggcacctatgctggtttctttgaatgagagggcagacattggtaggcgatgcatcggt 440

                                                                       
Query: 236 gcacatgtgtttaaagtgctttagtcaagtcacccaggaagccatcccccaaggctaagc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gcacatgtgtttaaagtgctttagtcaagtcacccaggaagccatcccccaaggccaagc 500

                                   
Query: 296 tacaggttgcagtgatgaactgct 319
           | |||| |||||||||||||||||
Sbjct: 501 ttcagggtgcagtgatgaactgct 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 724
Length adjustment: 9
Effective length of query: 310
Effective length of database: 715
Effective search space:   221650
Effective search space used:   221650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)