Query= MSMg01no404_n07.b1 MSMg01no404_n07.b1 CHROMAT_FILE:
MSMg01no404_n07.b1 PHD_FILE: MSMg01no404_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
(244 letters)
>mm_chr11_67308042_67308685
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 catccctgaaagttgccagggacgtcacttttttaaagcatcattttctgtcaactaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catccctgaaagttgccagggacgtcacttttttaaagcatcattttctgtcaactaccc 385
Query: 61 ggagaacattctcctttgtccccaaaccattgtctttcaataggaagccacatatgctca 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggagaacattctcctttgtccccaaaccattgtctttcagtaggaagccacatatgctca 325
Query: 121 gagccatgcttctctggcagctgcgggtcagatcctttcaaaatctgctaatggtttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagccatgcttctctggcagctgcgggtcagatcctttcaaaatctgctaatggtttagt 265
Query: 181 gttctgtggctgcccgacactcatcaggaagaaagttacataactggagatgatcagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttctgtggctgcccgacactcatcaggaagaaagttacataactggagatgatcagaag 205
Query: 241 acag 244
||||
Sbjct: 204 acag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_n07.g1 MSMg01no404_n07.g1 CHROMAT_FILE:
MSMg01no404_n07.g1 PHD_FILE: MSMg01no404_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
(484 letters)
>mm_chr11_67093771_67094654
Length = 884
Score = 814 bits (421), Expect = 0.0
Identities = 469/489 (95%), Gaps = 10/489 (2%)
Strand = Plus / Plus
Query: 1 actggcctgcccaagccaacagggctagcaaatgacaactcatataaagcaaagagccag 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 actggcctgcccaagccaacagggctagcaaataacaactcagataaagcaaagagccag 260
Query: 61 tttctgaaaacagatttgttcattttttttccaacttggatacaaaaaagttcaaacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctgaaaacagatttgttcattttttttccaacttggatacaaaaaagttcaaacaga 320
Query: 121 tccctttaaaagtaccttctcaacagcctaaaaaaagaggtctcaggcatatccagagaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tccctttaaaagtaccttctcaacagcctaaaaaa-gaggtctcaggcatatccagagaa 379
Query: 181 ctctgaattcttatgtggattttcaaatgacactgccgatgttgccagttttggagacag 240
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct: 380 ctctgaattcttatgtggattttcaaatgacacagccgatgatgccagctttggagacag 439
Query: 241 agct----ttatttttctggagatagagcatggataaagagaacttataaaattcctctc 296
||| | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 agcaagagtaag----ctggagatagagcatggataaagagaacttataaaattcctccc 495
Query: 297 atggactttgaaacattctcctattcaaatctgctagttctgcattatcaaagcacactc 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 496 atggactttgaaacattctcctattcaagtctgctagttctgcattatcaaagcacactc 555
Query: 357 atgatcggtcccagaacagcactaaaaccttttatcttcacatataaatgcctctggata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgatcggtcccagaacagcactaaaaccttttatcttcacatataaatgcctctggata 615
Query: 417 tgttctcagttcccatgttccctttcttctgtggagttttggtacctgggcacatttctt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgttctcagttcccatgttccctttcttctgtggagttttggtacctgggcacatttctt 675
Query: 477 tttt-gttt 484
|||| ||||
Sbjct: 676 tttttgttt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
